Transcript 8737 | MetamORF

Transcript

ID CARD

MetamORF ID

8737

ENST00000534650

Name

KAT5-216

Strand

Biotype

protein_coding

Start-end positions

65712620-65719603

CDS Start-stop positions

65714537-65719181

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

HGNC:5275

Aliases

cPLA2,
ENSG00000172977, ESA1, HGNC:5275,
HTATIP, HTATIP1, KAT5,
NCBI:10524, OFF:KAT5, PLIP,
TIP60, ZC2HC5

Chr 11

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
294851	54	CTG ...	LMR ...	Ribo-seq	CTG		7	sORFs_org_Human	Overlapping sORF Upstream	Blood, HEK293, HeLa, LCL, MDA-MB-231
294863	153	ATG ...	MRF ...	Ribo-seq	ATG		4	sORFs_org_Human	InCDS Overlapping sORF	Blood, HAP1, LCL, MDA-MB-231
294865	120	TTG ...	LRL ...	Ribo-seq	TTG		4	sORFs_org_Human	InCDS Overlapping sORF	Blood, HAP1, LCL, MDA-MB-231
287696	48	TTG ...	LRL ...	Ribo-seq	TTG		2	sORFs_org_Human	InCDS Overlapping sORF	HeLa, LCL
294859	69	CTG ...	LSS ...	Ribo-seq	CTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293T, LCL, MDA-MB-231, RPE-1
287692	105	GTG ...	VTY ...	Ribo-seq	GTG		4	sORFs_org_Human	InCDS Overlapping sORF	Blood, HAP1, LCL, MDA-MB-231
294867	114	TTG ...	LMD ...	Ribo-seq	TTG		3	sORFs_org_Human	InCDS Overlapping sORF	Blood, LCL, MDA-MB-231
294869	111	ATG ...	MDV ...	Ribo-seq	ATG		3	sORFs_org_Human	InCDS Overlapping sORF	Blood, LCL, MDA-MB-231
287698	42	TTG ...	LMD ...	Ribo-seq	TTG		1	sORFs_org_Human	InCDS Overlapping sORF	LCL
287694	81	ATG ...	MRF ...	Ribo-seq	ATG		2	sORFs_org_Human	InCDS Overlapping sORF	HAP1, LCL
294857	138	TTG ...	LSW ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, LCL, MDA-MB-231
294855	147	TTG ...	LSA ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, LCL, MDA-MB-231
287689	30	GTG ...	VRV ...	Ribo-seq	GTG	weak	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231, THP-1
294861	177	GTG ...	VTY ...	Ribo-seq	GTG		5	sORFs_org_Human	InCDS Overlapping sORF	Blood, HAP1, HeLa, LCL, MDA-MB-231
8736	84	ATG ...	MTV ...	Ribo-seq	ATG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231
409703	90	AGC ...	SQD ...	Ribo-seq	AGC		1	sORFs_org_Human	Overlapping sORF Upstream	HCT116
2328608	78	CTG ...	LVP ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231, MM1S
287700	39	ATG ...	MDV ...	Ribo-seq	ATG		1	sORFs_org_Human	InCDS Overlapping sORF	LCL
294853	51	ATG ...	MRT ...	Ribo-seq	ATG		7	sORFs_org_Human	Overlapping sORF Upstream	Blood, HEK293, HeLa, HFF, LCL, MDA-MB-231
1732386	69	CTG ...	LHP ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
1297671	84	GTG ...	VVL ...	Ribo-seq	GTG	strong	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293T, MDA-MB-231

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