Transcript 6591 | MetamORF

Transcript

ID CARD

MetamORF ID

6591

ENST00000534500

Name

PPP2R1B-211

Strand

Biotype

nonsense_mediated_decay

Start-end positions

111759814-111766367

CDS Start-stop positions

111761005-111766361

CDS Relative positions

Sequences

Transcript sequence

AAG ...

Genome browsers

UCSC

Gene

HGNC:9303

Aliases

ENSG00000137713,
HGNC:9303, NCBI:5519, OFF:PPP2R1B,
PP2A-Abeta, PPP2R1B, PR65B

Chr 11

ORFs

34 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
913019	63	GGT ...	GLF ...	Ribo-seq	GGT		1	sORFs_org_Human	Alternative Downstream NMD sORF	Jurkat
1298044	42	GTG ...	VEM ...	Ribo-seq	GTG	moderate	5	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HEK293, HEK293T, HeLa, hES, MDA-MB-231
913017	54	AGC ...	SVC ...	Ribo-seq	AGC		1	sORFs_org_Human	Alternative Downstream NMD sORF	Jurkat
6605	183	GTG ...	VES ...	Ribo-seq	GTG		20	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
1728859	45	CTG ...	LLL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	Alternative Downstream NMD sORF	Blood, MDA-MB-231
1728873	33	TTG ...	LLW ...	Ribo-seq	TTG	weak	2	sORFs_org_Human	Alternative Downstream NMD sORF	Blood, HeLa
636852	33	TTG ...	LQA ...	Ribo-seq	TTG		3	sORFs_org_Human	Downstream NMD sORF	Blood, HeLa, THP-1
6601	138	CTG ...	LEA ...	Ribo-seq	CTG		20	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
913039	120	GGC ...	GAS ...	Ribo-seq	GGC		2	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HEK293, Jurkat
6590	60	TTG ...	LFS ...	Ribo-seq	TTG		17	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
6603	174	CTG ...	LRQ ...	Ribo-seq	CTG		19	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
1728857	42	CTG ...	LLP ...	Ribo-seq	CTG	weak	2	sORFs_org_Human	Alternative Downstream NMD sORF	Blood, MDA-MB-231
290563	108	TTG ...	LFY ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative Downstream NMD sORF	Blood, LCL, MDA-MB-231
3317647	252	ATG ...	MAG ...	Predicted	ATG		1	Mackowiak2015	CDS NMD sORF
913023	96	GGG ...	GDW ...	Ribo-seq	GGG		1	sORFs_org_Human	Alternative Downstream NMD sORF	Jurkat
2321831	30	TTG ...	LLS ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Downstream NMD sORF	MDA-MB-231
1728863	69	ATG ...	MTH ...	Ribo-seq	ATG	weak	2	sORFs_org_Human	Alternative Downstream NMD sORF	Blood, MDA-MB-231
6611	231	TTG ...	LEN ...	Ribo-seq	TTG		18	sORFs_org_Human	Alternative Downstream NMD Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
1728875	36	CTG ...	LLL ...	Ribo-seq	CTG	weak	2	sORFs_org_Human	Alternative Downstream NMD sORF	Blood, HeLa
913037	72	GAT ...	DDS ...	Ribo-seq	GAT		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Jurkat
913015	36	GCA ...	ASN ...	Ribo-seq	GCA		1	sORFs_org_Human	Alternative Downstream NMD sORF	Jurkat
1728861	48	GTG ...	VLL ...	Ribo-seq	GTG	moderate	2	sORFs_org_Human	Alternative Downstream NMD sORF	Blood, MDA-MB-231
913035	66	TCG ...	SLY ...	Ribo-seq	TCG		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Jurkat
1728855	30	GTG ...	VKL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Alternative Downstream NMD sORF	Blood
1298040	30	ATG ...	MIR ...	Ribo-seq	ATG	moderate	5	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HEK293, HEK293T, HeLa, hES, MDA-MB-231
6599	117	CTG ...	LVK ...	Ribo-seq	CTG		20	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
6607	213	GTG ...	VEE ...	Ribo-seq	GTG		19	sORFs_org_Human	Alternative Downstream NMD Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
6595	72	TTG ...	LVH ...	Ribo-seq	TTG	strong	2	sORFs_org_Human	Downstream NMD sORF	HEK293, THP-1
6609	222	CTG ...	LAT ...	Ribo-seq	CTG		18	sORFs_org_Human	Alternative Downstream NMD Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
913031	30	CGC ...	RNE ...	Ribo-seq	CGC		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Jurkat
6597	114	GTG ...	VKR ...	Ribo-seq	GTG		18	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
6593	48	ATG ...	MWF ...	Ribo-seq	ATG	weak	2	sORFs_org_Human	Downstream NMD sORF	HEK293, MDA-MB-231
1301717	108	CTC ...	LGT ...	Ribo-seq	CTC		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	BJ
1298042	36	ATG ...	MEM ...	Ribo-seq	ATG	strong	5	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HEK293, HEK293T, HeLa, hES, MDA-MB-231

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