Transcript 5723 | MetamORF

Transcript

ID CARD

MetamORF ID

5723

ENST00000533919

Name

NDUFV1-226

Strand

Biotype

nonsense_mediated_decay

Start-end positions

67610393-67612433

CDS Start-stop positions

-67611487

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

HGNC:7716

Aliases

CI-51K,
ENSG00000167792, HGNC:7716, NCBI:4723,
NDUFV1, OFF:NDUFV1

Chr 11

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
636055	30	TTG ...	LRA ...	Ribo-seq	TTG	weak	2	sORFs_org_Human	NMD sORF	MDA-MB-231, THP-1
103103	153	GTG ...	VVR ...	Ribo-seq	GTG		8	sORFs_org_Human	NMD sORF	HEK293, HeLa, hES, HFF, RPE-1
1048250	60	GTG ...	VER ...	Ribo-seq	GTG	moderate	2	sORFs_org_Human	NMD sORF	HEK293, MDA-MB-231
103105	150	GTG ...	VRG ...	Ribo-seq	GTG		7	sORFs_org_Human	NMD sORF	HEK293, HeLa, hES, HFF
288301	249	CTG ...	LPG ...	Ribo-seq	CTG		5	sORFs_org_Human	NMD sORF	Blood, HAP1, HEK293, HeLa, LCL
5722	201	CTG ...	LIG ...	Ribo-seq	CTG		23	sORFs_org_Human	NMD sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MM1S, RPE-1, THP-1, U2OS
2318291	99	TTG ...	LTC ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	NMD sORF	MDA-MB-231
288303	237	TTG ...	LPH ...	Ribo-seq	TTG		5	sORFs_org_Human	NMD sORF	Blood, HAP1, HEK293, HeLa, LCL
408359	177	TCT ...	SGY ...	Ribo-seq	TCT		2	sORFs_org_Human	NMD sORF	HCT116, Jurkat
2318289	105	ATG ...	MIL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	NMD sORF	MDA-MB-231
103101	159	GTG ...	VFV ...	Ribo-seq	GTG		10	sORFs_org_Human	NMD sORF	BJ, HEK293, HeLa, hES, HFF, RPE-1
2318287	111	CTG ...	LAM ...	Ribo-seq	CTG	strong	1	sORFs_org_Human	NMD sORF	MDA-MB-231
2318281	132	TTG ...	LAR ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	NMD sORF	MDA-MB-231
2545629	264	CTG ...	LGH ...	Ribo-seq	CTG		2	sORFs_org_Human	NMD sORF	HEK293, HeLa
408357	210	GAG ...	EAG ...	Ribo-seq	GAG		1	sORFs_org_Human	NMD sORF	HCT116
2318295	75	CTG ...	LGP ...	Ribo-seq	CTG	strong	1	sORFs_org_Human	NMD sORF	MDA-MB-231
2318283	123	ATG ...	MLV ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	NMD sORF	MDA-MB-231
2318293	90	TTG ...	LWC ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	NMD sORF	MDA-MB-231
1008810	36	CTG ...	LWR ...	Ribo-seq	CTG	weak	6	sORFs_org_Human	NMD sORF	BJ, Blood, guo_2014, HEK293, MDA-MB-231, RPE-1
2318301	183	TTG ...	LAA ...	Ribo-seq	TTG	moderate	3	sORFs_org_Human	NMD sORF	HEK293, HeLa, MDA-MB-231
288305	195	CTG ...	LKE ...	Ribo-seq	CTG		16	sORFs_org_Human	NMD sORF	Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HeLa, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
2318285	117	GTG ...	VAL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	NMD sORF	MDA-MB-231

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