Transcript 2903 | MetamORF

Transcript

ID CARD

MetamORF ID

2903

ENST00000533439

Name

EIF3M-213

Strand

Biotype

protein_coding

Start-end positions

32584069-32589603

CDS Start-stop positions

32588608-

CDS Relative positions

Sequences

Transcript sequence

CTG ...

Genome browsers

UCSC

Gene

HGNC:24460

Aliases

eIF3m,
EIF3M, ENSG00000149100, FLJ29030,
GA17, hfl-B5, HGNC:24460,
NCBI:10480, OFF:EIF3M, PCID1,
TANGO7

Chr 11

ORFs

19 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
2905	48	CTG ...	LRF ...	Ribo-seq	CTG	moderate	27	sORFs_org_Human	sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
101457	42	CTG ...	LKE ...	Ribo-seq	CTG		14	sORFs_org_Human	sORF	BJ, Brain, Flp-In_T-REx-293, HCT116, HEK293, HeLa, hES, HFF, Jurkat
284018	57	TTG ...	LKA ...	Ribo-seq	TTG	weak	17	sORFs_org_Human	sORF	Blood, HAP1, HEK293, HEK293T, HeLa, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
407091	84	ACT ...	TEK ...	Ribo-seq	ACT		2	sORFs_org_Human	sORF	HCT116, HEK293
905569	36	CCA ...	PSS ...	Ribo-seq	CCA		1	sORFs_org_Human	sORF	Jurkat
905562	69	CAA ...	QII ...	Ribo-seq	CAA		2	sORFs_org_Human	sORF	HEK293, Jurkat
284020	45	GTG ...	VKS ...	Ribo-seq	GTG	weak	16	sORFs_org_Human	sORF	Blood, HAP1, HEK293, HEK293T, HeLa, LCL, MDA-MB-231, RPE-1, THP-1
2911	42	GTG ...	VGP ...	Ribo-seq	GTG		23	sORFs_org_Human	sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
2909	30	TTG ...	LWG ...	Ribo-seq	TTG	moderate	15	sORFs_org_Human	sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, MDA-MB-231, RPE-1, THP-1, U2OS
3200094	51	GCC ...	AYV ...	Ribo-seq	GCC	moderate	1	sORFs_org_Human	sORF	HEK293
905567	36	TCC ...	SCK ...	Ribo-seq	TCC	weak	1	sORFs_org_Human	sORF	Jurkat
905560	36	AAG ...	KRT ...	Ribo-seq	AAG	weak	1	sORFs_org_Human	sORF	Jurkat
905573	102	TCT ...	SDW ...	Ribo-seq	TCT		1	sORFs_org_Human	sORF	Jurkat
3200098	33	ACG ...	TPV ...	Ribo-seq	ACG		1	sORFs_org_Human	sORF	HEK293
905565	54	TGT ...	CGI ...	Ribo-seq	TGT	moderate	1	sORFs_org_Human	sORF	Jurkat
2902	135	CTG ...	LKS ...	Ribo-seq	CTG		32	sORFs_org_Human	sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
407088	54	AAG ...	KEL ...	Ribo-seq	AAG	moderate	2	sORFs_org_Human	sORF	HCT116, Jurkat
905571	48	GGA ...	GFL ...	Ribo-seq	GGA		4	sORFs_org_Human	sORF	HEK293, HeLa, Jurkat, THP-1
2907	48	GTG ...	VCL ...	Ribo-seq	GTG		20	sORFs_org_Human	sORF	BJ, Brain, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, MM1S

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