Transcript 2965 | MetamORF

Transcript

ID CARD

MetamORF ID

2965

ENST00000532927

Name

FBXO3-211

Strand

Biotype

nonsense_mediated_decay

Start-end positions

33747242-33774520

CDS Start-stop positions

33754455-33774497

CDS Relative positions

Sequences

Transcript sequence

AGA ...

Genome browsers

UCSC

Gene

HGNC:13582

Aliases

ENSG00000110429,
FBA, FBX3, FBXO3,
HGNC:13582, NCBI:26273, OFF:FBXO3

Chr 11

ORFs

33 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
905678	120	CAC ...	HDP ...	Ribo-seq	CAC		1	sORFs_org_Human	Alternative Downstream NMD sORF	Jurkat
2967	60	CTG ...	LPE ...	Ribo-seq	CTG		12	sORFs_org_Human	Alternative Downstream NMD sORF	Brain, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
1724091	66	TTG ...	LHT ...	Ribo-seq	TTG		5	sORFs_org_Human	InCDS NMD Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231, RPE-1
2312729	42	CTG ...	LRR ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative Downstream NMD sORF	MDA-MB-231
905676	39	CAT ...	HPP ...	Ribo-seq	CAT		1	sORFs_org_Human	Alternative Downstream NMD sORF	Jurkat
1130497	66	TTG ...	LKC ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	Alternative Downstream NMD sORF	HEK293, MDA-MB-231
3313543	519	ATG ...	MAA ...	Ribo-seq	ATG		1	Johnstone2016	CDS NMD	Brain_tumor, HEK293, HeLa, HFF
1724093	84	CTG ...	LSP ...	Ribo-seq	CTG		4	sORFs_org_Human	InCDS NMD Overlapping sORF	Blood, HEK293, MDA-MB-231, RPE-1
2969	81	GTG ...	VSV ...	Ribo-seq	GTG		12	sORFs_org_Human	Alternative Downstream NMD sORF	Blood, Brain, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
1731047	81	ATG ...	MSK ...	Ribo-seq	ATG		1	Johnstone2016	Downstream NMD sORF	Brain_tumor, HEK293, HeLa, HFF
2053406	48	CTG ...	LQR ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HEK293, MDA-MB-231
2975	222	TTG ...	LGS ...	Ribo-seq	TTG		18	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	BJ, Blood, Brain, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
905683	102	ATA ...	IHT ...	Ribo-seq	ATA		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Jurkat
527337	90	TTG ...	LSQ ...	Ribo-seq	TTG		10	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Blood, Brain, HEK293, HeLa, hES, HFF, RPE-1, U2OS
284111	72	GTG ...	VEA ...	Ribo-seq	GTG		7	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Brain, HEK293, HeLa, hES, LCL, RPE-1
284107	42	ATG ...	MLR ...	Ribo-seq	ATG	weak	3	sORFs_org_Human Johnstone2016	Alternative Downstream NMD sORF	Brain_tumor, HEK293, HeLa, HFF, LCL, MDA-MB-231
1047126	75	ATG ...	MSV ...	Ribo-seq	ATG	moderate	1	Johnstone2016	InCDS NMD Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
101512	132	CTG ...	LKY ...	Ribo-seq	CTG		10	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Blood, Brain, HEK293, HeLa, hES, MDA-MB-231, RPE-1
2977	90	GTG ...	VEA ...	Ribo-seq	GTG		4	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HEK293
905680	78	ATA ...	IAV ...	Ribo-seq	ATA		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Jurkat
2543791	42	CTG ...	LSV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Downstream NMD sORF	HEK293
2312726	33	GTG ...	VTW ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Alternative Downstream NMD sORF	MDA-MB-231
2971	180	TTG ...	LLD ...	Ribo-seq	TTG		16	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Blood, Brain, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
2973	207	CTG ...	LSN ...	Ribo-seq	CTG		19	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	BJ, Blood, Brain, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
284109	63	ATG ...	MCS ...	Ribo-seq	ATG	moderate	4	sORFs_org_Human Johnstone2016	Alternative Downstream NMD sORF	Brain_tumor, HEK293, HeLa, hES, HFF, LCL
407144	66	AAT ...	NAK ...	Ribo-seq	AAT		1	sORFs_org_Human	Alternative Downstream NMD sORF	HCT116
2312731	51	ATG ...	MHF ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human Johnstone2016	Alternative Downstream NMD sORF	Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
284125	78	ATG ...	MLL ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS NMD Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
527334	51	GTG ...	VEE ...	Ribo-seq	GTG		3	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, RPE-1, U2OS
905685	99	ACA ...	TGT ...	Ribo-seq	ACA		1	sORFs_org_Human	InCDS NMD Overlapping sORF	Jurkat
1987497	81	ATG ...	MLW ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS NMD Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
2964	93	TTG ...	LDS ...	Ribo-seq	TTG		12	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, Brain, guo_2014, HEK293, HeLa, hES, RPE-1, U2OS
481913	33	CTG ...	LPE ...	Ribo-seq	CTG		8	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, MDA-MB-231

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