Transcript 2637 | MetamORF

Transcript

ID CARD

MetamORF ID

2637

ENST00000532365

Name

AC116535.2-201

Strand

Biotype

antisense_RNA

Start-end positions

10783313-10801625

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

AC116535.2

Aliases

AC116535.2

Chr 11

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
406810	180	GGA ...	GVS ...	Ribo-seq	GGA		2	sORFs_org_Human	Overlapping sORF	HCT116, HEK293
283283	258	ATG ...	MNL ...	Ribo-seq	ATG		1	sORFs_org_Human	Overlapping sORF	LCL
3199986	69	ATG ...	MGQ ...	Ribo-seq	ATG		1	sORFs_org_Human	Overlapping sORF	HEK293
904361	42	ATG ...	MKG ...	Ribo-seq	ATG		1	sORFs_org_Human	Overlapping sORF	Jurkat
283294	150	ATG ...	MRV ...	Ribo-seq	ATG		1	sORFs_org_Human	Overlapping sORF	LCL
283281	264	CTG ...	LTM ...	Ribo-seq	CTG		1	sORFs_org_Human	Overlapping sORF	LCL
406802	282	TCA ...	SDQ ...	Ribo-seq	TCA		2	sORFs_org_Human	Overlapping sORF	HCT116, Jurkat
2636	204	GTG ...	VQS ...	Ribo-seq	GTG		17	sORFs_org_Human	Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
406812	123	ATG ...	MNR ...	Ribo-seq	ATG		2	sORFs_org_Human	Overlapping sORF	HCT116, Jurkat
101071	102	CTG ...	LPP ...	Ribo-seq	CTG		14	sORFs_org_Human	Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
283292	156	CTG ...	LIM ...	Ribo-seq	CTG		1	sORFs_org_Human	Overlapping sORF	LCL
904359	57	TCA ...	SSS ...	Ribo-seq	TCA		1	sORFs_org_Human	Overlapping sORF	Jurkat
283296	141	CTG ...	LAK ...	Ribo-seq	CTG		1	sORFs_org_Human	Overlapping sORF	LCL
283285	252	CTG ...	LCS ...	Ribo-seq	CTG		1	sORFs_org_Human	Overlapping sORF	LCL
904368	117	CGG ...	RNQ ...	Ribo-seq	CGG		2	sORFs_org_Human	Overlapping sORF	HEK293, Jurkat
904370	108	AGG ...	RDP ...	Ribo-seq	AGG		1	sORFs_org_Human	Overlapping sORF	Jurkat
406808	222	CAG ...	QSD ...	Ribo-seq	CAG		1	sORFs_org_Human	Overlapping sORF	HCT116
406804	36	CCA ...	PAI ...	Ribo-seq	CCA		2	sORFs_org_Human	Overlapping sORF	HCT116, Jurkat
283279	273	CTG ...	LSS ...	Ribo-seq	CTG		1	sORFs_org_Human	Overlapping sORF	LCL
283290	189	GTG ...	VPN ...	Ribo-seq	GTG		1	sORFs_org_Human	Overlapping sORF	LCL
406806	237	CCC ...	PSG ...	Ribo-seq	CCC		1	sORFs_org_Human	Overlapping sORF	HCT116
283288	219	CTG ...	LRT ...	Ribo-seq	CTG		1	sORFs_org_Human	Overlapping sORF	LCL

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