Transcript 2465 | MetamORF

Transcript

ID CARD

MetamORF ID

2465

ENST00000532063

Name

ILK-212

Strand

Biotype

protein_coding

Start-end positions

6603708-6610874

CDS Start-stop positions

6608745-6610611

CDS Relative positions

Sequences

Transcript sequence

AGG ...

Genome browsers

UCSC

Gene

HGNC:6040

Aliases

ENSG00000166333,
HGNC:6040, ILK, NCBI:3611,
OFF:ILK

Chr 11

ORFs

48 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
282840	57	GTG ...	VEF ...	Ribo-seq	GTG	moderate	10	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, LCL, MDA-MB-231, RPE-1, THP-1
903958	216	TCC ...	SRG ...	Ribo-seq	TCC		3	sORFs_org_Human	Alternative sORF Upstream	HeLa, Jurkat, THP-1
903967	129	TAC ...	YKA ...	Ribo-seq	TAC		1	sORFs_org_Human	sORF Upstream	Jurkat
1439305	192	CTG ...	LLW ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative sORF Upstream	HeLa
1723120	48	ATG ...	MSW ...	Ribo-seq	ATG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, MDA-MB-231
1130294	36	CTG ...	LDN ...	Ribo-seq	CTG		2	sORFs_org_Human	sORF Upstream	HEK293, HeLa
1723118	54	ATG ...	MSS ...	Ribo-seq	ATG	weak	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, hES, HFF, MDA-MB-231
282836	33	CTG ...	LAL ...	Ribo-seq	CTG	strong	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231, RPE-1
1723113	39	CTG ...	LDA ...	Ribo-seq	CTG	strong	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231, RPE-1
2467	39	ATG ...	MPV ...	Ribo-seq	ATG		4	sORFs_org_Human	Alternative sORF Upstream	HEK293, hES, HFF, MDA-MB-231
1094272	39	ATG ...	MER ...	Ribo-seq	ATG	strong	6	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, HEK293, MDA-MB-231
2616172	33	CGA ...	RSS ...	Ribo-seq	CGA		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, THP-1
633730	57	CTG ...	LMS ...	Ribo-seq	CTG	weak	7	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, hES, HFF, MDA-MB-231, THP-1
633732	30	CTG ...	LVA ...	Ribo-seq	CTG	strong	7	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, hES, HFF, MDA-MB-231, THP-1
1723115	75	CTG ...	LPE ...	Ribo-seq	CTG	weak	7	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, hES, HFF, MDA-MB-231, RPE-1
1512736	117	ATG ...	MPV ...	Ribo-seq	ATG		8	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, HEK293, HeLa, HFF, MDA-MB-231, RPE-1
2616174	48	CAT ...	HHT ...	Ribo-seq	CAT	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, THP-1
406711	60	TGT ...	CRE ...	Ribo-seq	TGT	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
2472	33	CTG ...	LEG ...	Ribo-seq	CTG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HeLa, hES, MDA-MB-231, THP-1, U2OS
2616932	69	CGA ...	RSS ...	Ribo-seq	CGA		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, THP-1
8761	63	CTG ...	LEG ...	Ribo-seq	CTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
282834	60	TTG ...	LSA ...	Ribo-seq	TTG	weak	8	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, HEK293, LCL, MDA-MB-231, RPE-1
1315967	84	CTG ...	LHY ...	Ribo-seq	CTG		2	sORFs_org_Human	sORF Upstream	HEK293, HeLa
1504226	66	ATG ...	MNT ...	Ribo-seq	ATG		8	sORFs_org_Human	Alternative sORF Upstream	BJ, Blood, HeLa, hES, HFF, MDA-MB-231, RPE-1
1439311	90	GTG ...	VPL ...	Ribo-seq	GTG		1	sORFs_org_Human	sORF Upstream	HeLa
633728	81	CTG ...	LPV ...	Ribo-seq	CTG	weak	7	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, hES, MDA-MB-231, RPE-1, THP-1
1130292	42	CTG ...	LWL ...	Ribo-seq	CTG		2	sORFs_org_Human	sORF Upstream	HEK293, HeLa
1504232	45	TTG ...	LLW ...	Ribo-seq	TTG	moderate	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HFF, MDA-MB-231
1007456	135	TTG ...	LQY ...	Ribo-seq	TTG		7	sORFs_org_Human	sORF Upstream	guo_2014, HEK293, HeLa, hES
526843	36	ATG ...	MKT ...	Ribo-seq	ATG	weak	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HeLa, MDA-MB-231, U2OS
2616176	84	TGT ...	CEV ...	Ribo-seq	TGT	strong	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, THP-1
2464	54	ATG ...	MCP ...	Ribo-seq	ATG		8	sORFs_org_Human	Alternative sORF Upstream	BJ, Blood, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
8763	135	GTG ...	VSP ...	Ribo-seq	GTG		9	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, HFF, MDA-MB-231, RPE-1, THP-1
282832	69	ATG ...	MGP ...	Ribo-seq	ATG	moderate	8	sORFs_org_Human	Alternative Overlapping sORF Upstream	Blood, HEK293, HFF, LCL, MDA-MB-231, RPE-1
916643	132	GAC ...	DAA ...	Ribo-seq	GAC		3	sORFs_org_Human	sORF Upstream	HeLa, Jurkat, THP-1
3305377	123	ATG ...	MDD ...	Predicted	ATG		1	Mackowiak2015	sORF Upstream
2310907	33	TTG ...	LLT ...	Ribo-seq	TTG	weak	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HFF, MDA-MB-231, RPE-1
8765	63	ATG ...	MSW ...	Ribo-seq	ATG		14	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
282842	36	GTG ...	VGT ...	Ribo-seq	GTG	moderate	3	sORFs_org_Human	InCDS Overlapping sORF	Blood, LCL, MDA-MB-231
294978	57	ATG ...	MKS ...	Ribo-seq	ATG		4	sORFs_org_Human	InCDS Overlapping sORF	HFF, LCL, MDA-MB-231, RPE-1
903969	123	GCA ...	ADI ...	Ribo-seq	GCA		1	sORFs_org_Human	sORF Upstream	Jurkat
1007458	108	GTG ...	VNE ...	Ribo-seq	GTG		2	sORFs_org_Human	sORF Upstream	guo_2014, HeLa
294975	144	ATG ...	MNT ...	Ribo-seq	ATG		8	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, HEK293, HeLa, HFF, LCL, MDA-MB-231, RPE-1
2616934	48	GTA ...	VCT ...	Ribo-seq	GTA		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, THP-1
282838	66	CTG ...	LKT ...	Ribo-seq	CTG	moderate	10	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, HFF, LCL, MDA-MB-231, RPE-1
1723111	33	CTG ...	LEY ...	Ribo-seq	CTG	strong	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, hES, MDA-MB-231
2310909	30	CTG ...	LTS ...	Ribo-seq	CTG	weak	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HFF, MDA-MB-231, RPE-1
1512734	132	ATG ...	MCP ...	Ribo-seq	ATG		7	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, HEK293, HeLa, HFF, MDA-MB-231, RPE-1

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