Transcript 2029 | MetamORF

Transcript

ID CARD

MetamORF ID

2029

ENST00000531923

Name

PNPLA2-205

Strand

Biotype

retained_intron

Start-end positions

822016-823572

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGG ...

Genome browsers

UCSC

Gene

HGNC:30802

Aliases

ATGL,
desnutrin, ENSG00000177666, FP17548,
HGNC:30802, iPLA2zeta, NCBI:57104,
OFF:PNPLA2, PNPLA2, TTS-2.2

Chr 11

ORFs

18 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
2681353	60	GTG ...	VCP ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Intronic sORF	RPE-1
1135998	180	CTG ...	LRV ...	Ribo-seq	CTG		2	sORFs_org_Human	Intronic sORF	HEK293
633407	129	GTG ...	VTS ...	Ribo-seq	GTG		9	sORFs_org_Human	Intronic sORF	Blood, HAP1, HEK293, HeLa, HFF, MDA-MB-231, RPE-1, THP-1
1722457	51	GTG ...	VEA ...	Ribo-seq	GTG	moderate	6	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, MDA-MB-231, RPE-1
903231	174	GTC ...	VTN ...	Ribo-seq	GTC		1	sORFs_org_Human	Intronic sORF	Jurkat
2028	300	GTG ...	VDG ...	Ribo-seq	GTG		8	sORFs_org_Human	Intronic sORF	HEK293, hES, HFF, RPE-1
1722459	204	ATG ...	MVA ...	Ribo-seq	ATG		7	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, HFF, MDA-MB-231, RPE-1
100677	243	GTG ...	VSP ...	Ribo-seq	GTG		5	sORFs_org_Human	Intronic sORF	HEK293, hES, HFF
903229	231	TCG ...	SGE ...	Ribo-seq	TCG		1	sORFs_org_Human	Intronic sORF	Jurkat
903225	285	TCA ...	SDN ...	Ribo-seq	TCA		1	sORFs_org_Human	Intronic sORF	Jurkat
903227	39	GAA ...	EHH ...	Ribo-seq	GAA	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
2681351	66	CTG ...	LSV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Intronic sORF	RPE-1
633403	201	GTG ...	VAF ...	Ribo-seq	GTG		11	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, hES, HFF, Jurkat, MDA-MB-231, RPE-1, THP-1
633405	174	ATG ...	MSL ...	Ribo-seq	ATG		11	sORFs_org_Human	Intronic sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1
903220	297	GAT ...	DGG ...	Ribo-seq	GAT		1	sORFs_org_Human	Intronic sORF	Jurkat
2681349	264	GTG ...	VQP ...	Ribo-seq	GTG		1	sORFs_org_Human	Intronic sORF	RPE-1
100675	276	CTG ...	LPL ...	Ribo-seq	CTG		7	sORFs_org_Human	Intronic sORF	HEK293, hES, HFF, RPE-1
1722455	228	GTG ...	VSR ...	Ribo-seq	GTG		7	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, HFF, MDA-MB-231, RPE-1

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