Transcript 101307

Transcript

ID CARD

MetamORF ID

101307

ENST00000531216

Name

SAAL1-209

Strand

Biotype

retained_intron

Start-end positions

18083215-18087206

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CTT ...

Genome browsers

UCSC

Gene

HGNC:25158

Aliases

ENSG00000166788,
FLJ41463, HGNC:25158, NCBI:113174,
OFF:SAAL1, SAAL1

Chr 11

ORFs

30 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
283592	36	GTG ...	VSE ...	Ribo-seq	GTG	moderate	9	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, U2OS
904988	255	TTA ...	LLF ...	Ribo-seq	TTA		1	sORFs_org_Human	Intronic sORF	Jurkat
406937	102	GAT ...	DVY ...	Ribo-seq	GAT		2	sORFs_org_Human	Intronic sORF	HCT116, Jurkat
406933	153	TCT ...	SAI ...	Ribo-seq	TCT		1	sORFs_org_Human	Intronic sORF	HCT116
1316229	243	CTG ...	LVC ...	Ribo-seq	CTG		1	sORFs_org_Human	Intronic sORF	hES
904978	135	CAG ...	QTE ...	Ribo-seq	CAG		1	sORFs_org_Human	Intronic sORF	Jurkat
904982	48	AGC ...	SLC ...	Ribo-seq	AGC	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
1316224	180	GTG ...	VLA ...	Ribo-seq	GTG		1	sORFs_org_Human	Intronic sORF	HEK293
904992	33	CAC ...	HWK ...	Ribo-seq	CAC	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
1046961	45	CTG ...	LMI ...	Ribo-seq	CTG	moderate	5	sORFs_org_Human	Intronic sORF	Blood, HEK293, hES, MDA-MB-231
904994	282	CCT ...	PDT ...	Ribo-seq	CCT		1	sORFs_org_Human	Intronic sORF	Jurkat
283598	102	CTG ...	LEK ...	Ribo-seq	CTG	strong	6	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231
283594	102	TTG ...	LTA ...	Ribo-seq	TTG	weak	2	sORFs_org_Human	Intronic sORF	LCL, MDA-MB-231
1136403	81	TTG ...	LKI ...	Ribo-seq	TTG	weak	5	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, hES, MDA-MB-231
904980	42	TGT ...	CLP ...	Ribo-seq	TGT	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
283596	75	TTG ...	LTW ...	Ribo-seq	TTG	weak	7	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231
904986	201	ATT ...	ILQ ...	Ribo-seq	ATT		1	sORFs_org_Human	Intronic sORF	Jurkat
904976	195	AGC ...	SLI ...	Ribo-seq	AGC	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
904984	66	AGA ...	RTE ...	Ribo-seq	AGA	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
1723662	57	CTG ...	LFF ...	Ribo-seq	CTG	weak	3	sORFs_org_Human	Intronic sORF	Blood, HEK293, MDA-MB-231
1204840	60	ATG ...	MNS ...	Ribo-seq	ATG	moderate	5	sORFs_org_Human	Intronic sORF	HAP1, HEK293, hES, MDA-MB-231
1316226	42	ATG ...	MIH ...	Ribo-seq	ATG	weak	4	sORFs_org_Human	Intronic sORF	HEK293, hES, MDA-MB-231
1046959	30	ATG ...	MPH ...	Ribo-seq	ATG	weak	6	sORFs_org_Human	Intronic sORF	Blood, HAP1, HEK293, MDA-MB-231
904996	288	CAT ...	HCP ...	Ribo-seq	CAT		1	sORFs_org_Human	Intronic sORF	Jurkat
283600	108	CTG ...	LTL ...	Ribo-seq	CTG	moderate	6	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231
2311923	33	GTG ...	VNF ...	Ribo-seq	GTG	weak	2	sORFs_org_Human	Intronic sORF	hES, MDA-MB-231
406935	219	TCT ...	SDD ...	Ribo-seq	TCT		1	sORFs_org_Human	Intronic sORF	HCT116
904990	258	AAT ...	NLL ...	Ribo-seq	AAT		1	sORFs_org_Human	Intronic sORF	Jurkat
101306	78	CTG ...	LLT ...	Ribo-seq	CTG		1	sORFs_org_Human	Intronic sORF	HEK293
1204838	39	CTG ...	LPS ...	Ribo-seq	CTG	weak	4	sORFs_org_Human	Intronic sORF	Blood, HAP1, HEK293, MDA-MB-231

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