Transcript 2886 | MetamORF

Transcript

ID CARD

MetamORF ID

2886

ENST00000530909

Name

ARL14EP-202

Strand

Biotype

protein_coding

Start-end positions

30328036-30332943

CDS Start-stop positions

30330949-

CDS Relative positions

Sequences

Transcript sequence

ATA ...

Genome browsers

UCSC

Gene

HGNC:26798

Aliases

ARF7EP,
ARL14EP, C11orf46, ENSG00000152219,
FLJ38968, HGNC:26798, NCBI:120534,
OFF:ARL14EP

Chr 11

ORFs

31 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
2885	54	ATG ...	MLI ...	Ribo-seq	ATG		5	sORFs_org_Human	sORF	HEK293, HeLa, hES, LCL
2312444	30	GTG ...	VTH ...	Ribo-seq	GTG	moderate	2	sORFs_org_Human	sORF	hES, MDA-MB-231
2888	51	TTG ...	LIL ...	Ribo-seq	TTG		6	sORFs_org_Human	sORF	HEK293, HeLa, hES, LCL, MDA-MB-231
905386	36	CAT ...	HVV ...	Ribo-seq	CAT	strong	1	sORFs_org_Human	sORF	Jurkat
1047030	63	GTG ...	VLN ...	Ribo-seq	GTG	weak	2	sORFs_org_Human	sORF	HEK293, MDA-MB-231
407052	78	ATT ...	IWK ...	Ribo-seq	ATT	weak	2	sORFs_org_Human	sORF	HCT116, Jurkat
283964	63	TTG ...	LTD ...	Ribo-seq	TTG	moderate	4	sORFs_org_Human	sORF	HEK293, HeLa, LCL, MDA-MB-231
1723904	33	CTG ...	LGT ...	Ribo-seq	CTG	moderate	3	sORFs_org_Human	sORF	Blood, hES, MDA-MB-231
1047032	54	TTG ...	LED ...	Ribo-seq	TTG	strong	2	sORFs_org_Human	sORF	HEK293, MDA-MB-231
905372	30	AAC ...	NLL ...	Ribo-seq	AAC	weak	1	sORFs_org_Human	sORF	Jurkat
1987312	54	TTG ...	LEA ...	Ribo-seq	TTG	moderate	4	sORFs_org_Human	sORF	HEK293, HeLa, hES, MDA-MB-231
283974	45	CTG ...	LKT ...	Ribo-seq	CTG		5	sORFs_org_Human	sORF	HEK293, HeLa, hES, LCL
2804007	36	ATG ...	MFS ...	Ribo-seq	ATG	weak	2	sORFs_org_Human	sORF	HeLa, RPE-1
2312450	36	CTG ...	LVG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	sORF	MDA-MB-231
905374	84	ACT ...	TIL ...	Ribo-seq	ACT	weak	1	sORFs_org_Human	sORF	Jurkat
283968	66	ATG ...	MEV ...	Ribo-seq	ATG		7	sORFs_org_Human	sORF	Blood, HeLa, hES, LCL, MDA-MB-231, RPE-1
2312448	42	TTG ...	LYL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	sORF	MDA-MB-231
905380	66	ACA ...	TLT ...	Ribo-seq	ACA	weak	1	sORFs_org_Human	sORF	Jurkat
283970	60	GTG ...	VWM ...	Ribo-seq	GTG		5	sORFs_org_Human	sORF	Blood, HeLa, hES, LCL
905389	63	GAA ...	EVW ...	Ribo-seq	GAA		1	sORFs_org_Human	sORF	Jurkat
283966	54	TTG ...	LRI ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	sORF	LCL, MDA-MB-231
527246	36	ATG ...	MHT ...	Ribo-seq	ATG	moderate	11	sORFs_org_Human	sORF	Blood, HEK293, HeLa, hES, MDA-MB-231, MM1S, RPE-1, U2OS
905384	42	AGA ...	RSH ...	Ribo-seq	AGA	weak	1	sORFs_org_Human	sORF	Jurkat
905378	42	GAA ...	EQY ...	Ribo-seq	GAA	weak	1	sORFs_org_Human	sORF	Jurkat
1723906	30	TTG ...	LLS ...	Ribo-seq	TTG	moderate	3	sORFs_org_Human	sORF	Blood, MDA-MB-231, RPE-1
283962	36	ATG ...	MIC ...	Ribo-seq	ATG	weak	6	sORFs_org_Human	sORF	Blood, HeLa, LCL, MDA-MB-231, RPE-1
1723899	126	TTG ...	LES ...	Ribo-seq	TTG	moderate	3	sORFs_org_Human	sORF	Blood, HeLa, MDA-MB-231
527244	45	TTG ...	LSK ...	Ribo-seq	TTG	moderate	10	sORFs_org_Human	sORF	Blood, HEK293, HeLa, hES, MDA-MB-231, MM1S, RPE-1, U2OS
407050	45	GAT ...	DGS ...	Ribo-seq	GAT	strong	4	sORFs_org_Human	sORF	HCT116, HEK293, Jurkat
905376	63	AAC ...	NWN ...	Ribo-seq	AAC	weak	1	sORFs_org_Human	sORF	Jurkat
1723901	102	ATG ...	MSA ...	Ribo-seq	ATG	weak	3	sORFs_org_Human	sORF	Blood, HeLa, MDA-MB-231

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