Transcript 287352

Transcript

ID CARD

MetamORF ID

287352

ENST00000530567

Name

CAPN1-220

Strand

Biotype

retained_intron

Start-end positions

65209144-65212006

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TAA ...

Genome browsers

UCSC

Gene

HGNC:1476

Aliases

CANP,
CANPL1, CAPN1, ENSG00000014216,
HGNC:1476, muCANP, muCL,
NCBI:823, OFF:CAPN1

Chr 11

ORFs

25 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
287376	54	TTG ...	LNT ...	Ribo-seq	TTG		4	sORFs_org_Human	Intronic sORF	hES, HFF, LCL, THP-1
287351	39	TTG ...	LQT ...	Ribo-seq	TTG	weak	8	sORFs_org_Human	Intronic sORF	BJ, Blood, HeLa, HFF, LCL, RPE-1
287364	114	CTG ...	LRL ...	Ribo-seq	CTG		1	sORFs_org_Human	Intronic sORF	LCL
909480	45	TTT ...	FQN ...	Ribo-seq	TTT	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
3200614	30	CCT ...	PGA ...	Ribo-seq	CCT		1	sORFs_org_Human	Intronic sORF	HEK293
287362	72	CTG ...	LAL ...	Ribo-seq	CTG	strong	1	sORFs_org_Human	Intronic sORF	LCL
909471	33	CAT ...	HEC ...	Ribo-seq	CAT	moderate	2	sORFs_org_Human	Intronic sORF	HEK293, Jurkat
909461	81	GAC ...	DQG ...	Ribo-seq	GAC		1	sORFs_org_Human	Intronic sORF	Jurkat
2424230	180	CTG ...	LYE ...	Ribo-seq	CTG		2	sORFs_org_Human	Intronic sORF	hES, HFF
287360	63	ATG ...	MGS ...	Ribo-seq	ATG	strong	10	sORFs_org_Human	Intronic sORF	BJ, Blood, HeLa, LCL, MDA-MB-231, RPE-1, THP-1
909465	33	TCC ...	SCG ...	Ribo-seq	TCC	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
287372	33	CTG ...	LPG ...	Ribo-seq	CTG		10	sORFs_org_Human	Intronic sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
287374	69	CTG ...	LYH ...	Ribo-seq	CTG		1	sORFs_org_Human	Intronic sORF	LCL
287370	36	TTG ...	LLP ...	Ribo-seq	TTG		11	sORFs_org_Human	Intronic sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
408099	69	TCA ...	SPA ...	Ribo-seq	TCA	weak	2	sORFs_org_Human	Intronic sORF	HCT116, Jurkat
287356	69	ATG ...	MAM ...	Ribo-seq	ATG	strong	11	sORFs_org_Human	Intronic sORF	BJ, Blood, HEK293, HeLa, LCL, MDA-MB-231, RPE-1, THP-1
287354	72	GTG ...	VMA ...	Ribo-seq	GTG	moderate	12	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, HEK293, HeLa, LCL, MDA-MB-231, RPE-1, THP-1
287368	33	TTG ...	LTI ...	Ribo-seq	TTG	moderate	11	sORFs_org_Human	Intronic sORF	BJ, Blood, HAP1, HeLa, hES, LCL, MDA-MB-231, RPE-1
408101	30	CAC ...	HRS ...	Ribo-seq	CAC	moderate	3	sORFs_org_Human	Intronic sORF	HCT116, HEK293, Jurkat
287366	114	CTG ...	LDQ ...	Ribo-seq	CTG		9	sORFs_org_Human	Intronic sORF	BJ, Blood, HeLa, hES, LCL, MDA-MB-231, RPE-1
909477	171	CTC ...	LII ...	Ribo-seq	CTC		1	sORFs_org_Human	Intronic sORF	Jurkat
909473	54	GTG ...	VPT ...	Ribo-seq	GTG		4	sORFs_org_Human	Intronic sORF	BJ, HEK293, HFF, Jurkat
909463	72	CTT ...	LQP ...	Ribo-seq	CTT		1	sORFs_org_Human	Intronic sORF	Jurkat
909469	153	TCG ...	SGS ...	Ribo-seq	TCG		1	sORFs_org_Human	Intronic sORF	Jurkat
909475	75	CTT ...	LQA ...	Ribo-seq	CTT	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat

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