Transcript 409798

Transcript

ID CARD

MetamORF ID

409798

ENST00000530360

Name

SLC25A22-215

Strand

Biotype

protein_coding

Start-end positions

794463-798267

CDS Start-stop positions

-795006

CDS Relative positions

Sequences

Transcript sequence

GCT ...

Genome browsers

UCSC

Gene

HGNC:19954

Aliases

EIEE3,
ENSG00000177542, FLJ13044, GC1,
HGNC:19954, NCBI:79751, NET44,
OFF:SLC25A22, SLC25A22

Chr 11

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
2329730	210	TTG ...	LLT ...	Ribo-seq	TTG		1	sORFs_org_Human	sORF	MDA-MB-231
903182	36	CAG ...	QPS ...	Ribo-seq	CAG	weak	1	sORFs_org_Human	sORF	Jurkat
526503	45	CTG ...	LAS ...	Ribo-seq	CTG	strong	12	sORFs_org_Human	sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, MDA-MB-231, RPE-1, THP-1, U2OS
534710	75	CTG ...	LRI ...	Ribo-seq	CTG		1	sORFs_org_Human	sORF	U2OS
903184	30	GCG ...	AVA ...	Ribo-seq	GCG	strong	1	sORFs_org_Human	sORF	Jurkat
534714	120	GTG ...	VDG ...	Ribo-seq	GTG		3	sORFs_org_Human	sORF	BJ, RPE-1, U2OS
534712	105	CTG ...	LES ...	Ribo-seq	CTG		3	sORFs_org_Human	sORF	BJ, RPE-1, U2OS
1503602	33	GTG ...	VAV ...	Ribo-seq	GTG	strong	6	sORFs_org_Human	sORF	BJ, HEK293, HeLa, RPE-1
526505	108	CTG ...	LGP ...	Ribo-seq	CTG	moderate	3	sORFs_org_Human	sORF	BJ, RPE-1, U2OS
526515	45	ATG ...	MAQ ...	Ribo-seq	ATG	moderate	5	sORFs_org_Human	sORF	BJ, MM1S, RPE-1, U2OS
526511	147	CTG ...	LEI ...	Ribo-seq	CTG	moderate	3	sORFs_org_Human	sORF	BJ, RPE-1, U2OS
526507	129	GTG ...	VEH ...	Ribo-seq	GTG	strong	3	sORFs_org_Human	sORF	BJ, RPE-1, U2OS
526509	135	CTG ...	LKV ...	Ribo-seq	CTG	weak	3	sORFs_org_Human	sORF	BJ, RPE-1, U2OS
1503607	111	GTG ...	VSA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	sORF	BJ
409797	93	GGT ...	GEG ...	Ribo-seq	GGT		1	sORFs_org_Human	sORF	HCT116
534716	123	GTG ...	VVD ...	Ribo-seq	GTG		3	sORFs_org_Human	sORF	BJ, RPE-1, U2OS
534718	141	GTG ...	VAE ...	Ribo-seq	GTG		2	sORFs_org_Human	sORF	BJ, U2OS
526517	129	GTG ...	VEE ...	Ribo-seq	GTG	strong	2	sORFs_org_Human	sORF	BJ, U2OS
526521	144	GTG ...	VLG ...	Ribo-seq	GTG	weak	2	sORFs_org_Human	sORF	BJ, U2OS
2329728	207	CTG ...	LTP ...	Ribo-seq	CTG		1	sORFs_org_Human	sORF	MDA-MB-231
1503605	93	GTG ...	VRA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	sORF	BJ
2309936	33	GTG ...	VAL ...	Ribo-seq	GTG		1	sORFs_org_Human	sORF	MDA-MB-231
526519	141	CTG ...	LGW ...	Ribo-seq	CTG	strong	2	sORFs_org_Human	sORF	BJ, U2OS

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