Transcript 2988 | MetamORF

Transcript

ID CARD

MetamORF ID

2988

ENST00000530008

Name

CAPRIN1-208

Strand

Biotype

processed_transcript

Start-end positions

34055738-34076596

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AAA ...

Genome browsers

UCSC

Gene

HGNC:6743

Aliases

caprin-1,
CAPRIN1, ENSG00000135387, GPIAP1,
HGNC:6743, M11S1, NCBI:4076,
OFF:CAPRIN1, RNG105

Chr 11

ORFs

33 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
3006	60	ATG ...	MEC ...	Ribo-seq	ATG	moderate	15	sORFs_org_Human	ncRNA sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
2998	138	TTG ...	LGD ...	Ribo-seq	TTG		32	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
407163	63	TCA ...	SLL ...	Ribo-seq	TCA		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
2987	81	TTG ...	LEF ...	Ribo-seq	TTG		24	sORFs_org_Human	ncRNA sORF	BJ, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, RPE-1, THP-1, U2OS
905710	42	CCG ...	PKR ...	Ribo-seq	CCG	weak	1	sORFs_org_Human	ncRNA sORF	Jurkat
3000	123	GTG ...	VRT ...	Ribo-seq	GTG		33	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
3010	81	TTG ...	LSE ...	Ribo-seq	TTG		32	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
407159	141	AAA ...	KLG ...	Ribo-seq	AAA		1	sORFs_org_Human	ncRNA sORF	HCT116
905708	60	GAA ...	ETR ...	Ribo-seq	GAA	weak	2	sORFs_org_Human	ncRNA sORF	HEK293, Jurkat
3002	111	CTG ...	LKQ ...	Ribo-seq	CTG		33	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
3004	99	TTG ...	LNG ...	Ribo-seq	TTG		33	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
2990	63	CTG ...	LYL ...	Ribo-seq	CTG	moderate	21	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, HFF, LCL, MDA-MB-231, RPE-1, THP-1
3014	60	TTG ...	LLD ...	Ribo-seq	TTG		31	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
905705	159	CTA ...	LQY ...	Ribo-seq	CTA		2	sORFs_org_Human	ncRNA sORF	HEK293, Jurkat
2996	147	TTG ...	LDK ...	Ribo-seq	TTG		32	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
3008	90	GTG ...	VPI ...	Ribo-seq	GTG		33	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
3200143	93	GGA ...	GVP ...	Ribo-seq	GGA		1	sORFs_org_Human	ncRNA sORF	HEK293
905701	51	TTC ...	FMA ...	Ribo-seq	TTC		1	sORFs_org_Human	ncRNA sORF	Jurkat
3016	57	TTG ...	LDE ...	Ribo-seq	TTG		30	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
407153	36	CAA ...	QDV ...	Ribo-seq	CAA		3	sORFs_org_Human	ncRNA sORF	HCT116, HEK293
2992	57	TTG ...	LSY ...	Ribo-seq	TTG	weak	24	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
905703	33	ACG ...	TSG ...	Ribo-seq	ACG	moderate	2	sORFs_org_Human	ncRNA sORF	HEK293, Jurkat
1504988	36	TTG ...	LQK ...	Ribo-seq	TTG	moderate	9	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
407155	198	GAA ...	EEA ...	Ribo-seq	GAA		2	sORFs_org_Human	ncRNA sORF	HCT116, HEK293
3200132	108	TCT ...	SKY ...	Ribo-seq	TCT		1	sORFs_org_Human	ncRNA sORF	HEK293
905697	51	TGC ...	CKR ...	Ribo-seq	TGC		1	sORFs_org_Human	ncRNA sORF	Jurkat
527350	78	ATG ...	MPF ...	Ribo-seq	ATG	weak	12	sORFs_org_Human	ncRNA sORF	Blood, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
3200135	225	ACA ...	TAR ...	Ribo-seq	ACA		1	sORFs_org_Human	ncRNA sORF	HEK293
2994	45	ATG ...	MFW ...	Ribo-seq	ATG	moderate	26	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
3012	66	TTG ...	LSL ...	Ribo-seq	TTG		32	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
407157	186	CAG ...	QKR ...	Ribo-seq	CAG		2	sORFs_org_Human	ncRNA sORF	HCT116, HEK293
905699	42	ATT ...	ITE ...	Ribo-seq	ATT		1	sORFs_org_Human	ncRNA sORF	Jurkat
407161	135	GGA ...	GDD ...	Ribo-seq	GGA		3	sORFs_org_Human	ncRNA sORF	HCT116, HEK293, Jurkat

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