Transcript 2624 | MetamORF

Transcript

ID CARD

MetamORF ID

2624

ENST00000529355

Name

CTR9-204

Strand

Biotype

retained_intron

Start-end positions

10767051-10768459

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ATT ...

Genome browsers

UCSC

Gene

HGNC:16850

Aliases

CTR9,
ENSG00000198730, HGNC:16850, KIAA0155,
NCBI:9646, OFF:CTR9, p150TSP,
SH2BP1, TSBP

Chr 11

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
2626	180	TTG ...	LAK ...	Ribo-seq	TTG		8	sORFs_org_Human	Intronic sORF	HEK293, HeLa, hES, HFF, MDA-MB-231
904351	150	GAA ...	EAT ...	Ribo-seq	GAA		1	sORFs_org_Human	Intronic sORF	Jurkat
406792	48	CGA ...	RDR ...	Ribo-seq	CGA		1	sORFs_org_Human	Intronic sORF	HCT116
904348	54	AAT ...	NDA ...	Ribo-seq	AAT		2	sORFs_org_Human	Intronic sORF	HEK293, Jurkat
101063	81	CTG ...	LAI ...	Ribo-seq	CTG		8	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, hES, HFF, THP-1
904343	42	AGA ...	RSC ...	Ribo-seq	AGA	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
283234	57	CTG ...	LFW ...	Ribo-seq	CTG	moderate	4	sORFs_org_Human	Intronic sORF	Blood, HEK293, LCL, MDA-MB-231
101065	39	CTG ...	LYA ...	Ribo-seq	CTG		1	sORFs_org_Human	Intronic sORF	HEK293
283223	66	TTG ...	LVF ...	Ribo-seq	TTG	moderate	7	sORFs_org_Human	Intronic sORF	BJ, Blood, HEK293, LCL, MDA-MB-231, RPE-1
2955212	66	GTG ...	VAP ...	Ribo-seq	GTG		1	sORFs_org_Human	Intronic sORF	hES
406794	171	GAT ...	DVF ...	Ribo-seq	GAT		1	sORFs_org_Human	Intronic sORF	HCT116
904353	105	GCT ...	AEL ...	Ribo-seq	GCT		1	sORFs_org_Human	Intronic sORF	Jurkat
283232	33	ATG ...	MQR ...	Ribo-seq	ATG	moderate	8	sORFs_org_Human	Intronic sORF	BJ, Blood, HEK293, HeLa, Jurkat, LCL, MDA-MB-231
2632	78	GTG ...	VWL ...	Ribo-seq	GTG		5	sORFs_org_Human	Intronic sORF	HEK293, hES, Jurkat
283228	57	TTG ...	LAT ...	Ribo-seq	TTG		4	sORFs_org_Human	Intronic sORF	HEK293, hES, LCL, MDA-MB-231
283225	66	TTG ...	LAI ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	Intronic sORF	LCL, MDA-MB-231
2628	30	CTG ...	LGR ...	Ribo-seq	CTG	strong	3	sORFs_org_Human	Intronic sORF	HEK293, LCL, MDA-MB-231
283230	69	GTG ...	VLW ...	Ribo-seq	GTG	moderate	6	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, Jurkat, LCL, MDA-MB-231
904346	66	CAA ...	QVL ...	Ribo-seq	CAA		1	sORFs_org_Human	Intronic sORF	Jurkat
3199981	63	TGG ...	WPS ...	Ribo-seq	TGG	weak	1	sORFs_org_Human	Intronic sORF	HEK293
1504473	36	ATG ...	MMQ ...	Ribo-seq	ATG	moderate	7	sORFs_org_Human	Intronic sORF	BJ, Blood, HEK293, HeLa, MDA-MB-231, MM1S
2623	198	TTG ...	LIG ...	Ribo-seq	TTG		10	sORFs_org_Human	Intronic sORF	BJ, HEK293, HeLa, hES, HFF, MDA-MB-231
283221	93	ATG ...	MYV ...	Ribo-seq	ATG	weak	2	sORFs_org_Human	Intronic sORF	HEK293, LCL
283236	30	GTG ...	VKL ...	Ribo-seq	GTG	weak	3	sORFs_org_Human	Intronic sORF	Blood, HEK293, LCL

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