Metam
ORF

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Transcript

Transcript

ID CARD

MetamORF ID

3019

ID

ENST00000529307

Name

CAPRIN1-207

Strand

+

Biotype

protein_coding

Start-end positions

34052981-34099514

CDS Start-stop positions

34071753-34099367

CDS Relative positions

-

Sequences

Transcript sequence

GTC ...

Gene

ID

HGNC:6743

Aliases

caprin-1,
CAPRIN1, ENSG00000135387, GPIAP1,
HGNC:6743, M11S1, NCBI:4076,
OFF:CAPRIN1, RNG105


Chr 11

ORFs

47 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

3037 90

GTG ...

VRK ...

Ribo-seq
GTG 15 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, HAP1, HEK293,
HEK293T, HeLa, hES,
HFF, LCL, loayza_puch_2016
284178 48

TTG ...

LKI ...

Ribo-seq
TTG moderate 11 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, HEK293, HeLa,
hES, HFF, LCL,
MDA-MB-231, RPE-1
3018 111

ATG ...

MNS ...

Ribo-seq
ATG 17 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HeLa,
hES, LCL, loayza_puch_2016,
RPE-1, THP-1
905720 78

AGG ...

RQP ...

Ribo-seq
AGG 2 sORFs_org_Human
    InCDS
    Overlapping
    sORF
HEK293, Jurkat
905715 147

AGC ...

SVF ...

Ribo-seq
AGC 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Jurkat
905728 42

GCG ...

AST ...

Ribo-seq
GCG moderate 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Jurkat
3201089 48

CAG ...

QKS ...

Ribo-seq
CAG 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HEK293
905726 54

TGT ...

CEK ...

Ribo-seq
TGT moderate 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Jurkat
905724 66

GGC ...

GRS ...

Ribo-seq
GGC weak 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Jurkat
638011 183

CTG ...

LNL ...

Ribo-seq
CTG 10 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Brain,
HEK293, HeLa, hES,
HFF, MDA-MB-231, RPE-1,
THP-1
3021 102

ATG ...

MNM ...

Ribo-seq
ATG 14 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Flp-In_T-REx-293, HAP1,
HEK293, HeLa, hES,
LCL, RPE-1
915935 72

ATC ...

ICT ...

Ribo-seq
ATC 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
915938 84

AAC ...

NPC ...

Ribo-seq
AAC 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
293254 63

ATG ...

MLQ ...

Ribo-seq
ATG 16 sORFs_org_Human
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Brain_tumor,
HEK293, HeLa, hES,
HFF, Jurkat, LCL,
loayza_puch_2016, MDA-MB-231, RPE-1,
U2OS
3025 51

GTG ...

VGP ...

Ribo-seq
GTG 27 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
guo_2014, HAP1, HEK293,
HEK293T, HeLa, hES,
HFF, LCL, loayza_puch_2016,
MDA-MB-231, MM1S, Monocyte,
RPE-1, THP-1, U2OS
3200146 108

ACC ...

TTR ...

Ribo-seq
ACC 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
HEK293
3039 30

ATG ...

MSG ...

Ribo-seq
ATG 15 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, Flp-In_T-REx-293, HEK293,
HeLa, hES, HFF,
LCL, MDA-MB-231, RPE-1
3029 150

TTG ...

LSV ...

Ribo-seq
TTG 27 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, HAP1,
HEK293, HEK293T, HeLa,
hES, HFF, LCL,
loayza_puch_2016, MDA-MB-231, MM1S,
RPE-1, THP-1, U2OS
905732 123

ATC ...

ICT ...

Ribo-seq
ATC 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
915941 75

TCA ...

SAR ...

Ribo-seq
TCA 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
3055 39

ATG ...

MPQ ...

Ribo-seq
ATG weak 1 Johnstone2016
    InCDS
    Overlapping
    sORF
Brain_tumor, HEK293, HeLa,
HFF
2994 45

ATG ...

MFW ...

Ribo-seq
ATG moderate 1 Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Brain_tumor, HEK293, HeLa,
HFF
1047153 63

CTG ...

LQL ...

Ribo-seq
CTG 2 sORFs_org_Human
    InCDS
    Overlapping
    sORF
HEK293
634155 60

CTG ...

LNL ...

Ribo-seq
CTG 12 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, Brain, HEK293,
HeLa, hES, HFF,
MDA-MB-231, RPE-1, THP-1
3027 153

TTG ...

LLS ...

Ribo-seq
TTG 28 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, HAP1,
HEK293, HEK293T, HeLa,
hES, HFF, LCL,
loayza_puch_2016, MDA-MB-231, MM1S,
RPE-1, THP-1, U2OS
483513 57

CTG ...

LSQ ...

Ribo-seq
CTG 10 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HEK293,
HEK293T, HeLa, hES,
MDA-MB-231, RPE-1, U2OS
293247 51

GTG ...

VGP ...

Ribo-seq
GTG 19 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, guo_2014,
HEK293, HEK293T, HeLa,
hES, LCL, loayza_puch_2016,
MDA-MB-231, MM1S, Monocyte,
THP-1, U2OS
527350 78

ATG ...

MPF ...

Ribo-seq
ATG weak 1 Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Brain_tumor, HEK293, HeLa,
HFF
3031 144

GTG ...

VFF ...

Ribo-seq
GTG 27 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, HAP1,
HEK293, HEK293T, HeLa,
hES, HFF, LCL,
loayza_puch_2016, MDA-MB-231, MM1S,
RPE-1, THP-1, U2OS
1047156 33

TTG ...

LIL ...

Ribo-seq
TTG weak 11 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, HEK293, HeLa,
hES, HFF, MDA-MB-231,
RPE-1
2312785 36

CTG ...

LHP ...

Ribo-seq
CTG moderate 2 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HEK293, MDA-MB-231
905730 30

CCT ...

PYG ...

Ribo-seq
CCT moderate 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Jurkat
3035 99

ATG ...

MGC ...

Ribo-seq
ATG 24 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, HAP1, HEK293,
HEK293T, HeLa, hES,
HFF, Jurkat, LCL,
loayza_puch_2016, RPE-1, U2OS
638013 171

TTG ...

LLS ...

Ribo-seq
TTG 9 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HEK293,
HeLa, hES, HFF,
MDA-MB-231, RPE-1, THP-1
3033 123

TTG ...

LTA ...

Ribo-seq
TTG 27 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, guo_2014,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
LCL, loayza_puch_2016, MM1S,
RPE-1, THP-1, U2OS
481947 48

TTG ...

LLS ...

Ribo-seq
TTG 14 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, Brain, HEK293,
HEK293T, HeLa, hES,
HFF, MDA-MB-231, RPE-1,
THP-1, U2OS
293252 105

GTG ...

VRG ...

Ribo-seq
GTG 11 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HAP1,
HEK293, HeLa, hES,
HFF, Jurkat, LCL,
MDA-MB-231, RPE-1
905717 132

CAA ...

QTT ...

Ribo-seq
CAA 2 sORFs_org_Human
    InCDS
    Overlapping
    sORF
HEK293, Jurkat
101560 30

ATG ...

MVP ...

Ribo-seq
ATG strong 1 Johnstone2016
    InCDS
    Overlapping
    sORF
Brain_tumor, HEK293, HeLa,
HFF
293250 33

ATG ...

MSG ...

Ribo-seq
ATG 7 sORFs_org_Human
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Blood, Brain_tumor, HEK293,
HeLa, HFF, LCL,
MDA-MB-231, RPE-1
905722 126

GCA ...

ATS ...

Ribo-seq
GCA moderate 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Jurkat
3006 60

ATG ...

MEC ...

Ribo-seq
ATG moderate 1 Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Brain_tumor, HEK293, HeLa,
HFF
1731088 42

ATG ...

MQL ...

Ribo-seq
ATG 4 sORFs_org_Human
Johnstone2016
    InCDS
    Overlapping
    sORF
Blood, Brain_tumor, HEK293,
HeLa, HFF, MDA-MB-231
2903979 57

TTG ...

LKT ...

Ribo-seq
TTG 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
HeLa
293256 30

TTG ...

LIR ...

Ribo-seq
TTG 8 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HEK293,
HeLa, LCL, MDA-MB-231,
RPE-1
3023 96

ATG ...

MPP ...

Ribo-seq
ATG 14 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Flp-In_T-REx-293, HAP1,
HEK293, HeLa, hES,
LCL, RPE-1
1094659 36

CTG ...

LSK ...

Ribo-seq
CTG 8 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HEK293,
hES, MDA-MB-231, RPE-1

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

B_cell

BJ

Blood

Brain

Brain_tumor

Breast

Flp-In_T-REx-293

guo_2014

HAP1

HCT116

HEK293

HEK293T

HeLa

hES

HFF

Jurkat

LCL

loayza_puch_2016

MDA-MB-231

MM1S

Monocyte

NCCIT

RPE-1

Skeletal_muscle

THP-1

U2OS