Transcript 5771 | MetamORF

Transcript

ID CARD

MetamORF ID

5771

ENST00000529172

Name

PPP6R3-216

Strand

Biotype

retained_intron

Start-end positions

68537816-68551219

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CAG ...

Genome browsers

UCSC

Gene

HGNC:1173

Aliases

C11orf23,
DKFZp781E17107, DKFZp781E2374, DKFZp781O2362,
ENSG00000110075, FLJ11058, FLJ43065,
HGNC:1173, KIAA1558, MGC125711,
MGC125712, NCBI:55291, OFF:PPP6R3,
PP6R3, PPP6R3, SAP190,
SAPL, SAPLa, SAPS3

Chr 11

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
910526	90	AGG ...	RNF ...	Ribo-seq	AGG		1	sORFs_org_Human	Intronic sORF	Jurkat
5775	84	TTG ...	LLR ...	Ribo-seq	TTG		19	sORFs_org_Human	Intronic sORF	BJ, Brain, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, RPE-1, THP-1, U2OS
5777	72	CTG ...	LTC ...	Ribo-seq	CTG		16	sORFs_org_Human	Intronic sORF	BJ, Brain, guo_2014, HAP1, HEK293, HeLa, hES, LCL, RPE-1, THP-1, U2OS
1137891	207	CTG ...	LGE ...	Ribo-seq	CTG		2	sORFs_org_Human	Intronic sORF	HEK293, hES
1137893	189	TTG ...	LLM ...	Ribo-seq	TTG		2	sORFs_org_Human	Intronic sORF	HEK293, hES
5770	162	GTG ...	VDF ...	Ribo-seq	GTG		25	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
910524	114	TGT ...	CRP ...	Ribo-seq	TGT		1	sORFs_org_Human	Intronic sORF	Jurkat
408378	69	GAA ...	EDL ...	Ribo-seq	GAA		2	sORFs_org_Human	Intronic sORF	HCT116, Jurkat
910520	144	AAT ...	NPL ...	Ribo-seq	AAT		1	sORFs_org_Human	Intronic sORF	Jurkat
1008840	51	GTG ...	VEI ...	Ribo-seq	GTG	moderate	5	sORFs_org_Human	Intronic sORF	guo_2014, HEK293, HeLa, hES, HFF
910532	42	CGA ...	RTS ...	Ribo-seq	CGA		1	sORFs_org_Human	Intronic sORF	Jurkat
1727289	33	GTG ...	VSC ...	Ribo-seq	GTG	weak	2	sORFs_org_Human	Intronic sORF	Blood, MDA-MB-231
408380	81	CTC ...	LRL ...	Ribo-seq	CTC		1	sORFs_org_Human	Intronic sORF	HCT116
408382	60	CAG ...	QRL ...	Ribo-seq	CAG	moderate	1	sORFs_org_Human	Intronic sORF	HCT116
910516	114	AAA ...	KRF ...	Ribo-seq	AAA		1	sORFs_org_Human	Intronic sORF	Jurkat
910511	57	ATG ...	MSR ...	Ribo-seq	ATG		5	sORFs_org_Human	Intronic sORF	HeLa, hES, Jurkat, MDA-MB-231, RPE-1
2904759	48	CTG ...	LIC ...	Ribo-seq	CTG		1	sORFs_org_Human	Intronic sORF	HeLa
910514	54	AAG ...	KTW ...	Ribo-seq	AAG		1	sORFs_org_Human	Intronic sORF	Jurkat
1048284	33	ATG ...	MID ...	Ribo-seq	ATG	weak	2	sORFs_org_Human	Intronic sORF	HEK293, MDA-MB-231
910522	75	CAG ...	QQG ...	Ribo-seq	CAG		1	sORFs_org_Human	Intronic sORF	Jurkat
5779	48	GTG ...	VYR ...	Ribo-seq	GTG		12	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1
910530	57	GCT ...	APD ...	Ribo-seq	GCT		1	sORFs_org_Human	Intronic sORF	Jurkat
910518	102	TTT ...	FES ...	Ribo-seq	TTT		1	sORFs_org_Human	Intronic sORF	Jurkat
910528	72	GGA ...	GFV ...	Ribo-seq	GGA		1	sORFs_org_Human	Intronic sORF	Jurkat
288431	33	CTG ...	LLS ...	Ribo-seq	CTG	weak	3	sORFs_org_Human	Intronic sORF	HeLa, LCL, MDA-MB-231
5773	87	TTG ...	LLL ...	Ribo-seq	TTG		20	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, RPE-1, THP-1, U2OS

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