Transcript 2004 | MetamORF

Transcript

ID CARD

MetamORF ID

2004

ENST00000527517

Name

RPLP2-205

Strand

Biotype

retained_intron

Start-end positions

812079-812850

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CTG ...

Genome browsers

UCSC

Gene

HGNC:10377

Aliases

D11S2243E,
ENSG00000177600, HGNC:10377, LP2,
MGC71408, NCBI:6181, OFF:RPLP2,
P2, RPLP2, RPP2

Chr 11

ORFs

12 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
2006	39	TTG ...	LAS ...	Ribo-seq	TTG	strong	34	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
2616074	225	GTA ...	VSG ...	Ribo-seq	GTA		3	sORFs_org_Human	Intronic sORF	HEK293, HeLa, THP-1
903202	240	CTG ...	LPL ...	Ribo-seq	CTG		3	sORFs_org_Human	Intronic sORF	HeLa, Jurkat, THP-1
406553	72	AGG ...	RSL ...	Ribo-seq	AGG		5	sORFs_org_Human	Intronic sORF	HCT116, HEK293, HeLa, Jurkat, THP-1
2003	135	CTG ...	LLW ...	Ribo-seq	CTG		33	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MM1S, RPE-1, THP-1, U2OS
903196	75	TGG ...	WWG ...	Ribo-seq	TGG		5	sORFs_org_Human	Intronic sORF	HEK293, HeLa, Jurkat, THP-1
2616071	60	CGT ...	RLC ...	Ribo-seq	CGT		3	sORFs_org_Human	Intronic sORF	HEK293, HeLa, THP-1
903198	69	GGC ...	GCS ...	Ribo-seq	GGC		3	sORFs_org_Human	Intronic sORF	HeLa, Jurkat, THP-1
2008	30	TTG ...	LPV ...	Ribo-seq	TTG	moderate	34	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
406555	60	AGT ...	SQM ...	Ribo-seq	AGT		5	sORFs_org_Human	Intronic sORF	HCT116, HEK293, HeLa, Jurkat, THP-1
1130158	30	CTG ...	LFH ...	Ribo-seq	CTG		6	sORFs_org_Human	Intronic sORF	Flp-In_T-REx-293, HAP1, HEK293, HeLa
2012	84	ATG ...	MRR ...	Ribo-seq	ATG		5	sORFs_org_Human	Intronic sORF	HCT116, HEK293, HeLa, Jurkat, THP-1

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