Metam
ORF

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Transcript

Transcript

ID CARD

MetamORF ID

3080

ID

ENST00000527498

Name

PUM1-219

Strand

-

Biotype

nonsense_mediated_decay

Start-end positions

30945401-30964872

CDS Start-stop positions

30953745-

CDS Relative positions

-

Sequences

Transcript sequence

TCC ...

Gene

ID

HGNC:14957

Aliases

ENSG00000134644,
HGNC:14957, KIAA0099, NCBI:9698,
OFF:PUM1, PUM1, PUMH1


Chr 1

ORFs

53 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1730257 99

CTG ...

LSA ...

Ribo-seq
CTG 4 sORFs_org_Human
    NMD
    sORF
Blood, HEK293, hES,
MDA-MB-231
3097 60

CTG ...

LRE ...

Ribo-seq
CTG 18 sORFs_org_Human
    NMD
    sORF
BJ, Blood, Brain,
guo_2014, HAP1, HEK293,
HEK293T, HeLa, hES,
MDA-MB-231, RPE-1, THP-1,
U2OS
902122 108

GCA ...

ALQ ...

Ribo-seq
GCA 1 sORFs_org_Human
    NMD
    sORF
Jurkat
3199571 120

CCT ...

PSG ...

Ribo-seq
CCT 1 sORFs_org_Human
    NMD
    sORF
HEK293
2323044 57

ATG ...

MAA ...

Ribo-seq
ATG moderate 2 sORFs_org_Human
    NMD
    sORF
hES, MDA-MB-231
902120 102

CAG ...

QMY ...

Ribo-seq
CAG 1 sORFs_org_Human
    NMD
    sORF
Jurkat
286743 219

GTG ...

VED ...

Ribo-seq
GTG 5 sORFs_org_Human
    NMD
    sORF
Blood, HEK293, LCL,
MDA-MB-231
902203 36

CAG ...

QWK ...

Ribo-seq
CAG 1 sORFs_org_Human
    NMD
    sORF
Jurkat
101607 111

TTG ...

LAL ...

Ribo-seq
TTG 8 sORFs_org_Human
    NMD
    sORF
Brain, HEK293, hES,
HFF, RPE-1
1136714 30

TTG ...

LSL ...

Ribo-seq
TTG weak 5 sORFs_org_Human
    NMD
    sORF
HEK293, HeLa, hES,
MDA-MB-231
286733 96

CTG ...

LMS ...

Ribo-seq
CTG 6 sORFs_org_Human
    NMD
    sORF
BJ, HEK293, HEK293T,
LCL, MDA-MB-231
2323042 48

GTG ...

VLS ...

Ribo-seq
GTG moderate 2 sORFs_org_Human
    NMD
    sORF
hES, MDA-MB-231
3099 99

TTG ...

LED ...

Ribo-seq
TTG 23 sORFs_org_Human
    NMD
    sORF
BJ, Blood, Brain,
Flp-In_T-REx-293, guo_2014, HAP1,
HEK293, HEK293T, HeLa,
hES, HFF, MDA-MB-231,
RPE-1, THP-1, U2OS
1130175 36

TTG ...

LVI ...

Ribo-seq
TTG 7 sORFs_org_Human
    NMD
    sORF
Blood, HEK293, HeLa,
hES, MDA-MB-231
481563 78

ATG ...

MKS ...

Ribo-seq
ATG 5 sORFs_org_Human
    NMD
    sORF
Blood, HEK293, HEK293T,
hES, MDA-MB-231
902116 45

CAG ...

QVI ...

Ribo-seq
CAG 1 sORFs_org_Human
    NMD
    sORF
Jurkat
902186 99

TGT ...

CLM ...

Ribo-seq
TGT 1 sORFs_org_Human
    NMD
    sORF
Jurkat
407298 84

AAC ...

NNR ...

Ribo-seq
AAC 1 sORFs_org_Human
    NMD
    sORF
HCT116
101635 147

CTG ...

LER ...

Ribo-seq
CTG 13 sORFs_org_Human
    NMD
    sORF
BJ, Brain, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, THP-1
1130179 63

CTG ...

LPT ...

Ribo-seq
CTG 6 sORFs_org_Human
    NMD
    sORF
Blood, HEK293, HeLa,
hES, MDA-MB-231
1730244 87

TTG ...

LSS ...

Ribo-seq
TTG 4 sORFs_org_Human
    NMD
    sORF
Blood, HEK293, hES,
MDA-MB-231
2323048 132

TTG ...

LAV ...

Ribo-seq
TTG strong 2 sORFs_org_Human
    NMD
    sORF
HeLa, MDA-MB-231
407295 63

TTT ...

FIP ...

Ribo-seq
TTT 2 sORFs_org_Human
    NMD
    sORF
HCT116, Jurkat
2323177 42

CTG ...

LAA ...

Ribo-seq
CTG moderate 1 sORFs_org_Human
    NMD
    sORF
MDA-MB-231
286731 93

ATG ...

MSC ...

Ribo-seq
ATG 5 sORFs_org_Human
    NMD
    sORF
HEK293, HEK293T, LCL,
MDA-MB-231
936239 69

GTG ...

VFG ...

Ribo-seq
GTG 3 sORFs_org_Human
    NMD
    sORF
Brain, HEK293, hES
286737 171

GTG ...

VQA ...

Ribo-seq
GTG 4 sORFs_org_Human
    NMD
    sORF
HEK293, LCL, MDA-MB-231
902205 204

GGA ...

GPG ...

Ribo-seq
GGA 1 sORFs_org_Human
    NMD
    sORF
Jurkat
3082 150

CTG ...

LAL ...

Ribo-seq
CTG 14 sORFs_org_Human
    NMD
    sORF
BJ, Blood, Brain,
HAP1, HEK293, HeLa,
hES, HFF, RPE-1,
THP-1
3079 144

TTG ...

LAE ...

Ribo-seq
TTG 14 sORFs_org_Human
    NMD
    sORF
Blood, Brain, Flp-In_T-REx-293,
HAP1, HEK293, HeLa,
hES, HFF, RPE-1,
THP-1
286729 81

CTG ...

LAG ...

Ribo-seq
CTG 5 sORFs_org_Human
    NMD
    sORF
HAP1, HEK293, LCL,
MDA-MB-231
101609 117

CTG ...

LSL ...

Ribo-seq
CTG 10 sORFs_org_Human
    NMD
    sORF
Brain, HAP1, HEK293,
hES, HFF, RPE-1,
THP-1
902197 198

CTC ...

LQA ...

Ribo-seq
CTC 1 sORFs_org_Human
    NMD
    sORF
Jurkat
902134 120

GTC ...

VLS ...

Ribo-seq
GTC 1 sORFs_org_Human
    NMD
    sORF
Jurkat
2323137 255

CTG ...

LFC ...

Ribo-seq
CTG 1 sORFs_org_Human
    NMD
    sORF
MDA-MB-231
902145 42

ATG ...

MCL ...

Ribo-seq
ATG 8 sORFs_org_Human
    NMD
    sORF
Blood, HEK293, HeLa,
hES, Jurkat, MDA-MB-231
1730259 111

GTG ...

VPH ...

Ribo-seq
GTG 4 sORFs_org_Human
    NMD
    sORF
Blood, HEK293, hES,
MDA-MB-231
101637 153

CTG ...

LKL ...

Ribo-seq
CTG 17 sORFs_org_Human
    NMD
    sORF
BJ, Blood, Brain,
Flp-In_T-REx-293, HAP1, HCT116,
HEK293, HEK293T, HeLa,
hES, Jurkat, RPE-1,
THP-1
2323046 123

TTG ...

LNR ...

Ribo-seq
TTG moderate 2 sORFs_org_Human
    NMD
    sORF
HeLa, MDA-MB-231
3115 33

GTG ...

VTF ...

Ribo-seq
GTG moderate 2 sORFs_org_Human
    NMD
    sORF
HEK293, MDA-MB-231
902153 75

GTG ...

VDV ...

Ribo-seq
GTG 4 sORFs_org_Human
    NMD
    sORF
Brain, HEK293, hES,
Jurkat
902193 144

CGA ...

RYG ...

Ribo-seq
CGA 1 sORFs_org_Human
    NMD
    sORF
Jurkat
2093122 201

CTG ...

LLQ ...

Ribo-seq
CTG 3 sORFs_org_Human
    NMD
    sORF
HEK293, MDA-MB-231
902195 189

CTG ...

LKP ...

Ribo-seq
CTG 4 sORFs_org_Human
    NMD
    sORF
HEK293, Jurkat, MDA-MB-231
902183 129

GAT ...

DVM ...

Ribo-seq
GAT 1 sORFs_org_Human
    NMD
    sORF
Jurkat
902136 141

GCA ...

AER ...

Ribo-seq
GCA 1 sORFs_org_Human
    NMD
    sORF
Jurkat
286745 225

ATG ...

MAV ...

Ribo-seq
ATG 5 sORFs_org_Human
    NMD
    sORF
Blood, HEK293, LCL,
MDA-MB-231
286735 105

ATG ...

MEC ...

Ribo-seq
ATG 7 sORFs_org_Human
    NMD
    sORF
Blood, HCT116, HEK293,
Jurkat, LCL, MDA-MB-231
2093125 204

CTG ...

LLL ...

Ribo-seq
CTG 3 sORFs_org_Human
    NMD
    sORF
HEK293, MDA-MB-231
902174 156

GAG ...

EQA ...

Ribo-seq
GAG 1 sORFs_org_Human
    NMD
    sORF
Jurkat
2958169 288

TTG ...

LTP ...

Ribo-seq
TTG 1 sORFs_org_Human
    NMD
    sORF
hES
1730232 141

ATG ...

MSS ...

Ribo-seq
ATG 6 sORFs_org_Human
    NMD
    sORF
Blood, HEK293, HeLa,
hES, MDA-MB-231
3105 147

TTG ...

LRY ...

Ribo-seq
TTG 23 sORFs_org_Human
    NMD
    sORF
BJ, Blood, Brain,
Flp-In_T-REx-293, guo_2014, HAP1,
HEK293, HEK293T, HeLa,
hES, HFF, MDA-MB-231,
RPE-1, THP-1, U2OS

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

B_cell

BJ

Blood

Brain

Brain_tumor

Breast

Flp-In_T-REx-293

guo_2014

HAP1

HCT116

HEK293

HEK293T

HeLa

hES

HFF

Jurkat

LCL

loayza_puch_2016

MDA-MB-231

MM1S

Monocyte

NCCIT

RPE-1

Skeletal_muscle

THP-1

U2OS