Transcript 4358 | MetamORF

Transcript

ID CARD

MetamORF ID

4358

ENST00000527204

Name

MTA2-204

Strand

Biotype

protein_coding

Start-end positions

62593842-62601275

CDS Start-stop positions

62593875-62597683

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

HGNC:7411

Aliases

ENSG00000149480,
HGNC:7411, MTA1-L1, MTA1L1,
MTA2, NCBI:9219, OFF:MTA2

Chr 11

ORFs

30 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
294336	210	TTG ...	LRT ...	Ribo-seq	TTG		21	sORFs_org_Human	Alternative sORF Upstream	BJ, Blood, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
1047730	72	CTG ...	LPM ...	Ribo-seq	CTG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293
409588	93	GTA ...	VAS ...	Ribo-seq	GTA		1	sORFs_org_Human	Alternative sORF Upstream	HCT116
2327888	174	CTG ...	LLP ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
4351	78	ATG ...	MPG ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
1731939	63	ATG ...	MPP ...	Ribo-seq	ATG		1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
2055383	75	ATG ...	MLL ...	Ribo-seq	ATG		2	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
1725790	84	GTG ...	VQG ...	Ribo-seq	GTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
483692	147	ATG ...	MEM ...	Ribo-seq	ATG		19	sORFs_org_Human Johnstone2016	Alternative sORF Upstream	BJ, Blood, Brain_tumor, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1
483688	126	TTG ...	LSV ...	Ribo-seq	TTG		15	sORFs_org_Human	Alternative sORF Upstream	BJ, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1
2327885	114	GTG ...	VRV ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
1725792	99	CTG ...	LKL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	InCDS Overlapping sORF	Blood, MDA-MB-231
483694	153	CTG ...	LQM ...	Ribo-seq	CTG		18	sORFs_org_Human	Alternative sORF Upstream	BJ, Blood, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1
483690	141	ATG ...	MWR ...	Ribo-seq	ATG		16	sORFs_org_Human	Alternative sORF Upstream	BJ, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1
2055379	57	ATG ...	MPS ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
2315736	54	ATG ...	MRW ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
1047728	66	ATG ...	MEG ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293
1009999	75	CTG ...	LIV ...	Ribo-seq	CTG		10	sORFs_org_Human	Alternative sORF Upstream	BJ, guo_2014, HEK293, HeLa, hES, HFF, RPE-1
1319833	186	TTG ...	LFC ...	Ribo-seq	TTG		10	sORFs_org_Human	Alternative sORF Upstream	BJ, HEK293, HeLa, hES, HFF, MM1S, RPE-1
908270	30	CAA ...	QCQ ...	Ribo-seq	CAA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
2055381	63	ATG ...	MPM ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, RPE-1
483686	66	ATG ...	MPG ...	Ribo-seq	ATG		11	sORFs_org_Human	Alternative sORF Upstream	BJ, guo_2014, HEK293, HEK293T, HeLa, hES, HFF, MM1S, RPE-1
3201178	30	CAG ...	QTG ...	Ribo-seq	CAG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
638297	63	ATG ...	MGR ...	Ribo-seq	ATG		3	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231, THP-1
1049581	132	TTG ...	LPD ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
286425	39	ATG ...	MGR ...	Ribo-seq	ATG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, LCL
4357	30	ATG ...	MVS ...	Ribo-seq	ATG	strong	4	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF, THP-1
1731945	180	GTG ...	VQL ...	Ribo-seq	GTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
2327891	45	TTG ...	LNH ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative sORF Upstream	MDA-MB-231
1731943	156	TTG ...	LRG ...	Ribo-seq	TTG		2	sORFs_org_Human	InCDS Overlapping sORF	Blood, MDA-MB-231

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