Transcript 2703 | MetamORF

Transcript

ID CARD

MetamORF ID

2703

ENST00000527202

Name

FAR1-203

Strand

Biotype

processed_transcript

Start-end positions

13710724-13715843

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ACG ...

Genome browsers

UCSC

Gene

HGNC:26222

Aliases

ENSG00000197601,
FAR1, FLJ22728, HGNC:26222,
MLSTD2, NCBI:84188, OFF:FAR1,
SDR10E1

Chr 11

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
2053265	30	ATG ...	MLY ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	ncRNA sORF	HEK293
527094	39	TTG ...	LRQ ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	ncRNA sORF	HeLa, MDA-MB-231
904614	87	TAT ...	YHY ...	Ribo-seq	TAT		1	sORFs_org_Human	ncRNA sORF	Jurkat
2543491	30	TTG ...	LQT ...	Ribo-seq	TTG		1	sORFs_org_Human	ncRNA sORF	HEK293
904610	99	AGC ...	STN ...	Ribo-seq	AGC		1	sORFs_org_Human	ncRNA sORF	Jurkat
101144	33	TTG ...	LVP ...	Ribo-seq	TTG		11	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
904612	102	TCC ...	SNH ...	Ribo-seq	TCC		1	sORFs_org_Human	ncRNA sORF	Jurkat
904608	51	ATT ...	IVQ ...	Ribo-seq	ATT		1	sORFs_org_Human	ncRNA sORF	Jurkat
936530	120	GTG ...	VYN ...	Ribo-seq	GTG		3	sORFs_org_Human	ncRNA sORF	Brain, HEK293
2707	66	GTG ...	VAI ...	Ribo-seq	GTG		20	sORFs_org_Human	ncRNA sORF	Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
904604	75	TGC ...	CPC ...	Ribo-seq	TGC	weak	1	sORFs_org_Human	ncRNA sORF	Jurkat
904606	63	GTA ...	VVV ...	Ribo-seq	GTA		1	sORFs_org_Human	ncRNA sORF	Jurkat
2702	150	TTG ...	LIG ...	Ribo-seq	TTG		24	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
904585	111	GCA ...	ALA ...	Ribo-seq	GCA		1	sORFs_org_Human	ncRNA sORF	Jurkat
904600	93	AAT ...	NTC ...	Ribo-seq	AAT	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
904589	81	GGA ...	GAK ...	Ribo-seq	GGA		1	sORFs_org_Human	ncRNA sORF	Jurkat
2705	108	TTG ...	LAE ...	Ribo-seq	TTG		21	sORFs_org_Human	ncRNA sORF	Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
904593	45	GGC ...	GHR ...	Ribo-seq	GGC		1	sORFs_org_Human	ncRNA sORF	Jurkat
904583	144	CAC ...	HKS ...	Ribo-seq	CAC		1	sORFs_org_Human	ncRNA sORF	Jurkat
904595	39	CGA ...	RLL ...	Ribo-seq	CGA		1	sORFs_org_Human	ncRNA sORF	Jurkat
101142	36	TTG ...	LLV ...	Ribo-seq	TTG		11	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
283448	30	GTG ...	VPV ...	Ribo-seq	GTG		10	sORFs_org_Human	ncRNA sORF	BJ, Blood, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
904587	111	AGA ...	RRS ...	Ribo-seq	AGA		1	sORFs_org_Human	ncRNA sORF	Jurkat
904602	105	CGT ...	RAS ...	Ribo-seq	CGT		1	sORFs_org_Human	ncRNA sORF	Jurkat
904591	93	TGT ...	CGN ...	Ribo-seq	TGT		1	sORFs_org_Human	ncRNA sORF	Jurkat
1819573	39	GTG ...	VPP ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	ncRNA sORF	HeLa

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