Transcript 2336 | MetamORF

Transcript

ID CARD

MetamORF ID

2336

ENST00000526350

Name

RRM1-203

Strand

Biotype

retained_intron

Start-end positions

4094852-4107570

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CTC ...

Genome browsers

UCSC

Gene

HGNC:10451

Aliases

ENSG00000167325,
HGNC:10451, NCBI:6240, OFF:RRM1,
RRM1

Chr 11

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
2346	81	ATG ...	MLS ...	Ribo-seq	ATG		16	sORFs_org_Human	Intronic sORF	Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
406650	84	GCC ...	AGA ...	Ribo-seq	GCC		1	sORFs_org_Human	Intronic sORF	HCT116
2340	135	TTG ...	LAA ...	Ribo-seq	TTG		28	sORFs_org_Human	Intronic sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
406652	54	GGA ...	GSF ...	Ribo-seq	GGA		1	sORFs_org_Human	Intronic sORF	HCT116
2342	111	TTG ...	LTT ...	Ribo-seq	TTG		25	sORFs_org_Human	Intronic sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
2344	87	CTG ...	LTM ...	Ribo-seq	CTG		16	sORFs_org_Human	Intronic sORF	Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
633658	33	CTG ...	LSG ...	Ribo-seq	CTG	moderate	6	sORFs_org_Human	Intronic sORF	BJ, HEK293, HeLa, RPE-1, THP-1
633656	36	GTG ...	VLS ...	Ribo-seq	GTG	moderate	6	sORFs_org_Human	Intronic sORF	BJ, HEK293, HeLa, RPE-1, THP-1
2352	54	TTG ...	LHK ...	Ribo-seq	TTG		12	sORFs_org_Human	Intronic sORF	HAP1, HEK293, HeLa, hES, HFF
406646	153	TGC ...	CSE ...	Ribo-seq	TGC		1	sORFs_org_Human	Intronic sORF	HCT116
2338	150	GTG ...	VEL ...	Ribo-seq	GTG		28	sORFs_org_Human	Intronic sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
2348	81	CTG ...	LAA ...	Ribo-seq	CTG		14	sORFs_org_Human	Intronic sORF	Blood, HAP1, HEK293, HeLa, hES, HFF, THP-1
903737	36	GCC ...	ATS ...	Ribo-seq	GCC		3	sORFs_org_Human	Intronic sORF	BJ, HEK293, Jurkat
406648	90	CTG ...	LAP ...	Ribo-seq	CTG	moderate	11	sORFs_org_Human	Intronic sORF	BJ, HCT116, HEK293, HEK293T, HeLa, Jurkat, loayza_puch_2016, RPE-1
481688	108	CTG ...	LSS ...	Ribo-seq	CTG	weak	6	sORFs_org_Human	Intronic sORF	BJ, HEK293, HEK293T, HeLa, loayza_puch_2016, MM1S
1309873	66	CCT ...	PEQ ...	Ribo-seq	CCT	moderate	1	sORFs_org_Human	Intronic sORF	HEK293
526790	75	CTG ...	LSP ...	Ribo-seq	CTG	moderate	12	sORFs_org_Human	Intronic sORF	BJ, guo_2014, HEK293, HEK293T, HeLa, hES, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS
1315917	45	CTG ...	LKK ...	Ribo-seq	CTG	moderate	7	sORFs_org_Human	Intronic sORF	BJ, HEK293, HeLa, loayza_puch_2016, RPE-1
903741	45	TCA ...	SSE ...	Ribo-seq	TCA		1	sORFs_org_Human	Intronic sORF	Jurkat
2335	171	TTG ...	LYS ...	Ribo-seq	TTG		28	sORFs_org_Human	Intronic sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
1315923	54	CTG ...	LEP ...	Ribo-seq	CTG	moderate	4	sORFs_org_Human	Intronic sORF	BJ, HEK293, HeLa
2350	57	CTG ...	LSL ...	Ribo-seq	CTG		12	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1

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