Transcript 2729 | MetamORF

Transcript

ID CARD

MetamORF ID

2729

ENST00000526191

Name

COPB1-204

Strand

Biotype

processed_transcript

Start-end positions

14474010-14475875

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

HGNC:2231

Aliases

COPB,
COPB1, ENSG00000129083, HGNC:2231,
NCBI:1315, OFF:COPB1

Chr 11

ORFs

19 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
904681	45	GCC ...	ALS ...	Ribo-seq	GCC		1	sORFs_org_Human	ncRNA sORF	Jurkat
101163	93	CTG ...	LTK ...	Ribo-seq	CTG	moderate	14	sORFs_org_Human	ncRNA sORF	Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, RPE-1, U2OS
283468	30	TTG ...	LLL ...	Ribo-seq	TTG	weak	10	sORFs_org_Human	ncRNA sORF	Blood, HAP1, HEK293, hES, LCL, MDA-MB-231, RPE-1, THP-1
3200025	60	TAT ...	YAT ...	Ribo-seq	TAT		1	sORFs_org_Human	ncRNA sORF	HEK293
915680	210	GCA ...	ATQ ...	Ribo-seq	GCA		1	sORFs_org_Human	ncRNA sORF	Jurkat
2728	42	ATG ...	MEI ...	Ribo-seq	ATG	moderate	13	sORFs_org_Human	ncRNA sORF	BJ, Blood, HAP1, HEK293, HFF, Jurkat, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
7774	234	TTG ...	LVT ...	Ribo-seq	TTG		30	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HCT116, HEK293, HeLa, hES, HFF, Jurkat, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
3201051	213	TAT ...	YAT ...	Ribo-seq	TAT		1	sORFs_org_Human	ncRNA sORF	HEK293
2731	150	TTG ...	LRG ...	Ribo-seq	TTG	weak	20	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, RPE-1, THP-1, U2OS
904676	105	GTT ...	VLD ...	Ribo-seq	GTT		1	sORFs_org_Human	ncRNA sORF	Jurkat
1007645	63	TTG ...	LVQ ...	Ribo-seq	TTG	strong	1	sORFs_org_Human	ncRNA sORF	guo_2014
904686	159	TTC ...	FRN ...	Ribo-seq	TTC		1	sORFs_org_Human	ncRNA sORF	Jurkat
2733	81	TTG ...	LVT ...	Ribo-seq	TTG		30	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HCT116, HEK293, HEK293T, HeLa, hES, HFF, Jurkat, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
101165	135	CTG ...	LDG ...	Ribo-seq	CTG	moderate	19	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HeLa, hES, HFF, Jurkat, LCL, RPE-1, THP-1, U2OS
904674	57	GAG ...	EDS ...	Ribo-seq	GAG	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
904683	57	GCA ...	ATQ ...	Ribo-seq	GCA		1	sORFs_org_Human	ncRNA sORF	Jurkat
915678	198	GCC ...	ALS ...	Ribo-seq	GCC		1	sORFs_org_Human	ncRNA sORF	Jurkat
101161	78	TTG ...	LRY ...	Ribo-seq	TTG	moderate	5	sORFs_org_Human	ncRNA sORF	guo_2014, HEK293, HEK293T, hES, HFF
904670	84	ATT ...	IAL ...	Ribo-seq	ATT	strong	1	sORFs_org_Human	ncRNA sORF	Jurkat

Export data