Transcript 286919

Transcript

ID CARD

MetamORF ID

286919

ENST00000525948

Name

PUM1-215

Strand

Biotype

nonsense_mediated_decay

Start-end positions

30992441-31065695

CDS Start-stop positions

31028848-31059566

CDS Relative positions

Sequences

Transcript sequence

GTG ...

Genome browsers

UCSC

Gene

HGNC:14957

Aliases

ENSG00000134644,
HGNC:14957, KIAA0099, NCBI:9698,
OFF:PUM1, PUM1, PUMH1

Chr 1

ORFs

14 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
481641	48	ATG ...	MKW ...	Ribo-seq	ATG	weak	2	sORFs_org_Human	Downstream NMD sORF	HEK293T, MDA-MB-231
407326	144	GAT ...	DVM ...	Ribo-seq	GAT		1	sORFs_org_Human	Downstream NMD sORF	HCT116
286918	42	GTG ...	VKR ...	Ribo-seq	GTG	moderate	2	sORFs_org_Human	Alternative Downstream NMD sORF	LCL, MDA-MB-231
3409522	285	ATG ...	MSV ...	Predicted	ATG		1	Mackowiak2015	CDS NMD sORF
2323405	72	CTG ...	LVI ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Downstream NMD sORF	MDA-MB-231
902333	204	GAA ...	EKK ...	Ribo-seq	GAA		1	sORFs_org_Human	Downstream NMD sORF	Jurkat
2323403	54	CTG ...	LLM ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Downstream NMD sORF	MDA-MB-231
286931	60	GTG ...	VMK ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Alternative Downstream NMD sORF	LCL
286924	57	ATG ...	MKT ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	Alternative Downstream NMD sORF	LCL
286933	69	ATG ...	MQT ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human	Alternative Downstream NMD sORF	HEK293, LCL
902325	135	GAC ...	DKT ...	Ribo-seq	GAC		1	sORFs_org_Human	Downstream NMD sORF	Jurkat
902321	69	GTT ...	VYQ ...	Ribo-seq	GTT		1	sORFs_org_Human	Alternative Downstream NMD sORF	Jurkat
3258	276	TTG ...	LTS ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HeLa
407330	189	GGT ...	GTF ...	Ribo-seq	GGT		2	sORFs_org_Human	Downstream NMD sORF	HCT116, Jurkat

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