Transcript 292057

Transcript

ID CARD

MetamORF ID

292057

ENST00000525677

Name

THYN1-205

Strand

Biotype

processed_transcript

Start-end positions

134251231-134253301

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TGG ...

Genome browsers

UCSC

Gene

HGNC:29560

Aliases

ENSG00000151500,
HGNC:29560, NCBI:29087, OFF:THYN1,
THY28, THYN1

Chr 11

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
915035	45	GTG ...	VSL ...	Ribo-seq	GTG		4	sORFs_org_Human	ncRNA sORF	HEK293, Jurkat, MDA-MB-231
1207802	90	TTG ...	LIL ...	Ribo-seq	TTG		3	sORFs_org_Human	ncRNA sORF	HAP1, HEK293, MDA-MB-231
292061	60	CTG ...	LQR ...	Ribo-seq	CTG		16	sORFs_org_Human	ncRNA sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
915023	48	TGG ...	WRT ...	Ribo-seq	TGG		1	sORFs_org_Human	ncRNA sORF	Jurkat
292056	60	TTG ...	LQT ...	Ribo-seq	TTG		11	sORFs_org_Human	ncRNA sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
915029	48	CCC ...	PGR ...	Ribo-seq	CCC		1	sORFs_org_Human	ncRNA sORF	Jurkat
915027	33	CAA ...	QGT ...	Ribo-seq	CAA	strong	1	sORFs_org_Human	ncRNA sORF	Jurkat
915021	33	GGA ...	GLQ ...	Ribo-seq	GGA		1	sORFs_org_Human	ncRNA sORF	Jurkat
915039	117	ACT ...	TSS ...	Ribo-seq	ACT		1	sORFs_org_Human	ncRNA sORF	Jurkat
409416	87	ATC ...	IVR ...	Ribo-seq	ATC		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
915041	51	GGG ...	GSV ...	Ribo-seq	GGG		1	sORFs_org_Human	ncRNA sORF	Jurkat
915025	177	GCA ...	ALA ...	Ribo-seq	GCA		1	sORFs_org_Human	ncRNA sORF	Jurkat
915033	36	TGG ...	WSH ...	Ribo-seq	TGG		1	sORFs_org_Human	ncRNA sORF	Jurkat
915037	69	AAC ...	NKV ...	Ribo-seq	AAC		1	sORFs_org_Human	ncRNA sORF	Jurkat
409268	81	GGG ...	GTS ...	Ribo-seq	GGG		1	sORFs_org_Human	ncRNA sORF	HCT116
2547533	51	GTG ...	VEP ...	Ribo-seq	GTG		1	sORFs_org_Human	ncRNA sORF	HEK293
1319182	39	CTG ...	LWS ...	Ribo-seq	CTG		3	sORFs_org_Human	ncRNA sORF	HEK293, MDA-MB-231
1992958	72	ATG ...	MRR ...	Ribo-seq	ATG		3	sORFs_org_Human	ncRNA sORF	HeLa, hES
1207800	42	TTG ...	LIP ...	Ribo-seq	TTG		9	sORFs_org_Human	ncRNA sORF	HAP1, HEK293, HeLa, MM1S, RPE-1
1824706	72	TTG ...	LLL ...	Ribo-seq	TTG		2	sORFs_org_Human	ncRNA sORF	HeLa
292059	33	CTG ...	LGL ...	Ribo-seq	CTG		6	sORFs_org_Human	ncRNA sORF	BJ, Flp-In_T-REx-293, HAP1, hES, LCL
915031	66	AGT ...	SPL ...	Ribo-seq	AGT		1	sORFs_org_Human	ncRNA sORF	Jurkat

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