Transcript 284643

Transcript

ID CARD

MetamORF ID

284643

ENST00000525488

Name

ARHGAP1-203

Strand

Biotype

protein_coding

Start-end positions

46681069-46697284

CDS Start-stop positions

-46696107

CDS Relative positions

Sequences

Transcript sequence

GTT ...

Genome browsers

UCSC

Gene

HGNC:673

Aliases

ARHGAP1,
Cdc42GAP, CDC42GAP, ENSG00000175220,
HGNC:673, NCBI:392, OFF:ARHGAP1,
p50rhoGAP, RhoGAP

Chr 11

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
2326989	60	CTG ...	LTS ...	Ribo-seq	CTG		2	sORFs_org_Human	sORF	HFF, MDA-MB-231
293575	144	ATG ...	MTH ...	Ribo-seq	ATG		7	sORFs_org_Human	sORF	BJ, HeLa, HFF, LCL, MDA-MB-231, RPE-1
2326991	69	ATG ...	MKC ...	Ribo-seq	ATG		1	sORFs_org_Human	sORF	MDA-MB-231
293573	132	ATG ...	MTS ...	Ribo-seq	ATG		6	sORFs_org_Human	sORF	BJ, HFF, LCL, MDA-MB-231, RPE-1
916099	99	CCT ...	PCT ...	Ribo-seq	CCT		1	sORFs_org_Human	sORF	Jurkat
293571	93	ATG ...	MTS ...	Ribo-seq	ATG		4	sORFs_org_Human	sORF	BJ, LCL, MDA-MB-231, RPE-1
1511860	69	TTG ...	LCL ...	Ribo-seq	TTG		3	sORFs_org_Human	sORF	BJ, MDA-MB-231, RPE-1
1825192	90	ATG ...	MRR ...	Ribo-seq	ATG		5	sORFs_org_Human	sORF	HeLa, HFF, MDA-MB-231
1511858	60	GTG ...	VPV ...	Ribo-seq	GTG		2	sORFs_org_Human	sORF	BJ, MDA-MB-231
2094159	108	TTG ...	LKL ...	Ribo-seq	TTG		1	sORFs_org_Human	sORF	BJ
284642	36	GTG ...	VTT ...	Ribo-seq	GTG	moderate	9	sORFs_org_Human	sORF	BJ, Blood, HeLa, HFF, LCL, MDA-MB-231, RPE-1
2094157	102	CTG ...	LVS ...	Ribo-seq	CTG		2	sORFs_org_Human	sORF	BJ, RPE-1
906488	90	CAG ...	QKI ...	Ribo-seq	CAG		1	sORFs_org_Human	sORF	Jurkat
293569	84	ATG ...	MGG ...	Ribo-seq	ATG		5	sORFs_org_Human	sORF	BJ, HFF, LCL, MDA-MB-231, RPE-1
906485	63	AGC ...	SEL ...	Ribo-seq	AGC		1	sORFs_org_Human	sORF	Jurkat
407289	75	GTG ...	VNY ...	Ribo-seq	GTG		2	sORFs_org_Human	sORF	HCT116, Jurkat
1511866	99	GTG ...	VSG ...	Ribo-seq	GTG		3	sORFs_org_Human	sORF	BJ, RPE-1

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