Transcript 3706 | MetamORF

Transcript

ID CARD

MetamORF ID

3706

ENST00000525470

Name

MRPL16-202

Strand

Biotype

retained_intron

Start-end positions

59807236-59810022

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AAA ...

Genome browsers

UCSC

Gene

HGNC:14476

Aliases

ENSG00000166902,
FLJ20484, HGNC:14476, MRPL16,
NCBI:54948, OFF:MRPL16, PNAS-111

Chr 11

ORFs

16 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
907535	120	GAA ...	EPK ...	Ribo-seq	GAA	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
937492	54	CTG ...	LLP ...	Ribo-seq	CTG		2	sORFs_org_Human	Intronic sORF	HEK293, HeLa
3710	138	GTG ...	VPK ...	Ribo-seq	GTG	weak	23	sORFs_org_Human	Intronic sORF	BJ, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, RPE-1, THP-1, U2OS
3708	66	GTG ...	VTY ...	Ribo-seq	GTG	weak	25	sORFs_org_Human	Intronic sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, Jurkat, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
3705	45	CTG ...	LKL ...	Ribo-seq	CTG	weak	17	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
3712	30	TTG ...	LKG ...	Ribo-seq	TTG	weak	11	sORFs_org_Human	Intronic sORF	Blood, Flp-In_T-REx-293, HEK293, hES, MDA-MB-231, MM1S, U2OS
907541	147	GCA ...	APL ...	Ribo-seq	GCA	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
407546	111	AAT ...	NLS ...	Ribo-seq	AAT	moderate	3	sORFs_org_Human	Intronic sORF	HCT116, HEK293, Jurkat
907537	135	CCA ...	PKV ...	Ribo-seq	CCA	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
907539	30	ACT ...	TCA ...	Ribo-seq	ACT	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
907545	156	ATT ...	IER ...	Ribo-seq	ATT	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
1047535	66	ATG ...	MFP ...	Ribo-seq	ATG	moderate	12	sORFs_org_Human	Intronic sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1
3714	54	CTG ...	LKN ...	Ribo-seq	CTG	weak	16	sORFs_org_Human	Intronic sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, hES, MDA-MB-231, RPE-1, U2OS
907543	39	AAG ...	KGT ...	Ribo-seq	AAG	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
907531	33	TAC ...	YRR ...	Ribo-seq	TAC	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
907547	177	GAA ...	EKP ...	Ribo-seq	GAA	weak	1	sORFs_org_Human	Intronic sORF	Jurkat

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