Transcript 3333 | MetamORF

Transcript

ID CARD

MetamORF ID

3333

ENST00000525212

Name

NDUFS3-203

Strand

Biotype

processed_transcript

Start-end positions

47582052-47584561

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CCA ...

Genome browsers

UCSC

Gene

HGNC:7710

Aliases

CI-30,
ENSG00000213619, HGNC:7710, NCBI:4722,
NDUFS3, OFF:NDUFS3

Chr 11

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
906835	36	TGT ...	CCL ...	Ribo-seq	TGT	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
634494	48	CTG ...	LLS ...	Ribo-seq	CTG		9	sORFs_org_Human	ncRNA sORF	Blood, HEK293, hES, MDA-MB-231, RPE-1, THP-1
1007972	201	CTG ...	LRF ...	Ribo-seq	CTG		4	sORFs_org_Human	ncRNA sORF	guo_2014, HEK293, HeLa
634506	51	CTG ...	LGG ...	Ribo-seq	CTG	moderate	4	sORFs_org_Human	ncRNA sORF	Blood, HeLa, MDA-MB-231, THP-1
3344	138	GTG ...	VAE ...	Ribo-seq	GTG	strong	27	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, guo_2014, HEK293, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
906837	36	CAA ...	QLT ...	Ribo-seq	CAA	weak	1	sORFs_org_Human	ncRNA sORF	Jurkat
3350	93	CTG ...	LNS ...	Ribo-seq	CTG	moderate	28	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
101862	207	TTG ...	LSL ...	Ribo-seq	TTG		5	sORFs_org_Human	ncRNA sORF	guo_2014, HEK293, HeLa
3332	48	TTG ...	LST ...	Ribo-seq	TTG	moderate	13	sORFs_org_Human	ncRNA sORF	Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, LCL, MDA-MB-231, RPE-1
634492	54	TTG ...	LSL ...	Ribo-seq	TTG		9	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, MDA-MB-231, RPE-1, THP-1
3183023	78	CTG ...	LFS ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	ncRNA sORF	HeLa
3342	141	GTG ...	VVA ...	Ribo-seq	GTG	moderate	26	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, guo_2014, HEK293, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
3348	120	TTG ...	LAQ ...	Ribo-seq	TTG	strong	28	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
3346	126	GTG ...	VEL ...	Ribo-seq	GTG	moderate	27	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
3340	150	GTG ...	VKR ...	Ribo-seq	GTG	moderate	26	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, guo_2014, HEK293, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
906833	42	ACA ...	TTC ...	Ribo-seq	ACA	weak	1	sORFs_org_Human	ncRNA sORF	Jurkat
917680	282	GAC ...	DMF ...	Ribo-seq	GAC		1	sORFs_org_Human	ncRNA sORF	Jurkat
9451	234	CTG ...	LTD ...	Ribo-seq	CTG		29	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
409854	255	CAC ...	HPD ...	Ribo-seq	CAC		3	sORFs_org_Human	ncRNA sORF	HCT116, HEK293, Jurkat
1047407	39	CTG ...	LCS ...	Ribo-seq	CTG		5	sORFs_org_Human	ncRNA sORF	Blood, HEK293, hES, MDA-MB-231, RPE-1
1047405	45	CTG ...	LSL ...	Ribo-seq	CTG		5	sORFs_org_Human	ncRNA sORF	Blood, HEK293, hES, MDA-MB-231, RPE-1
1130635	177	GTG ...	VKT ...	Ribo-seq	GTG		2	sORFs_org_Human	ncRNA sORF	HEK293, HeLa
101860	210	CTG ...	LLS ...	Ribo-seq	CTG		6	sORFs_org_Human	ncRNA sORF	guo_2014, HEK293, HeLa, HFF

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