Transcript 3554 | MetamORF

Transcript

ID CARD

MetamORF ID

3554

ENST00000525158

Name

TIMM10-202

Strand

Biotype

protein_coding

Start-end positions

57528641-57530734

CDS Start-stop positions

57528717-57530189

CDS Relative positions

Sequences

Transcript sequence

CTC ...

Genome browsers

UCSC

Gene

HGNC:11814

Aliases

ENSG00000134809,
HGNC:11814, NCBI:26519, OFF:TIMM10,
TIM10, TIM10A, TIMM10,
TIMM10A

Chr 11

ORFs

30 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
3562	129	GTG ...	VPA ...	Ribo-seq	GTG	weak	20	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
907183	75	CCC ...	PFH ...	Ribo-seq	CCC	moderate	1	sORFs_org_Human	Alternative Overlapping sORF Upstream	Jurkat
3556	111	GTG ...	VCL ...	Ribo-seq	GTG	moderate	17	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
907185	81	GGA ...	GDP ...	Ribo-seq	GGA	strong	1	sORFs_org_Human	Alternative Overlapping sORF Upstream	Jurkat
482143	117	ATG ...	MVM ...	Ribo-seq	ATG	moderate	18	sORFs_org_Human Johnstone2016	Alternative Overlapping sORF Upstream	BJ, Brain_tumor, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, U2OS
407461	54	TGG ...	WGL ...	Ribo-seq	TGG		3	sORFs_org_Human	sORF Upstream	HCT116, HEK293, Jurkat
1319730	90	TTG ...	LSE ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative sORF Upstream	HEK293
3558	75	GTG ...	VCA ...	Ribo-seq	GTG	moderate	17	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Brain, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
482135	57	CTG ...	LRW ...	Ribo-seq	CTG	moderate	17	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, MM1S, RPE-1, U2OS
409537	87	TCA ...	SEV ...	Ribo-seq	TCA		1	sORFs_org_Human	Alternative sORF Upstream	HCT116
907181	135	CAG ...	QGP ...	Ribo-seq	CAG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, Jurkat
907179	54	ACC ...	TDV ...	Ribo-seq	ACC	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
482141	114	GTG ...	VMS ...	Ribo-seq	GTG	moderate	17	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, MM1S, RPE-1, U2OS
285228	48	GTG ...	VSL ...	Ribo-seq	GTG	moderate	13	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
907177	39	GAT ...	DGQ ...	Ribo-seq	GAT	strong	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
3314269	273	ATG ...	MDP ...	Predicted Ribo-seq	ATG		2	Mackowiak2015 Johnstone2016	CDS sORF	Brain_tumor, HEK293, HeLa, HFF
3200331	99	AGG ...	RIR ...	Ribo-seq	AGG	weak	1	sORFs_org_Human	Alternative Overlapping sORF Upstream	HEK293
3016372	36	GTG ...	VGA ...	Ribo-seq	GTG	strong	1	sORFs_org_Human	sORF Upstream	MM1S
3560	87	CTG ...	LPP ...	Ribo-seq	CTG	weak	18	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
3200324	60	CTA ...	LQG ...	Ribo-seq	CTA	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
3553	66	CTG ...	LCA ...	Ribo-seq	CTG	moderate	15	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
482137	54	CTG ...	LLP ...	Ribo-seq	CTG	weak	6	sORFs_org_Human	Alternative sORF Upstream	BJ, Blood, HEK293T, MDA-MB-231, RPE-1
101960	33	GTG ...	VGI ...	Ribo-seq	GTG		23	sORFs_org_Human	Alternative sORF Upstream	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
482139	111	ATG ...	MSA ...	Ribo-seq	ATG	moderate	17	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, MM1S, RPE-1, U2OS
407463	51	TCA ...	SEV ...	Ribo-seq	TCA		2	sORFs_org_Human	Alternative sORF Upstream	HCT116, Jurkat
3200326	66	TCC ...	SSL ...	Ribo-seq	TCC	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
528252	123	GTG ...	VLM ...	Ribo-seq	GTG	weak	14	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, guo_2014, HEK293, HEK293T, HeLa, hES, MDA-MB-231, MM1S, RPE-1, U2OS
907187	36	TGT ...	CDP ...	Ribo-seq	TGT		2	sORFs_org_Human	sORF Upstream	HEK293, Jurkat
528250	120	CTG ...	LMV ...	Ribo-seq	CTG	moderate	15	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, guo_2014, HEK293, HEK293T, HeLa, hES, MDA-MB-231, MM1S, RPE-1, U2OS
285239	54	TTG ...	LSE ...	Ribo-seq	TTG		24	sORFs_org_Human	Alternative sORF Upstream	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS

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