Transcript 2694 | MetamORF

Transcript

ID CARD

MetamORF ID

2694

ENST00000524933

Name

FAR1-202

Strand

Biotype

retained_intron

Start-end positions

13694900-13711099

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCA ...

Genome browsers

UCSC

Gene

HGNC:26222

Aliases

ENSG00000197601,
FAR1, FLJ22728, HGNC:26222,
MLSTD2, NCBI:84188, OFF:FAR1,
SDR10E1

Chr 11

ORFs

25 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
904569	273	ACG ...	TRQ ...	Ribo-seq	ACG		1	sORFs_org_Human	Intronic sORF	Jurkat
101136	36	ATG ...	MPT ...	Ribo-seq	ATG	weak	9	sORFs_org_Human	Intronic sORF	Blood, HAP1, HEK293, HeLa, MDA-MB-231, THP-1
904571	63	TGC ...	CTT ...	Ribo-seq	TGC	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
2698	99	CTG ...	LAL ...	Ribo-seq	CTG		24	sORFs_org_Human	Intronic sORF	Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, Monocyte, RPE-1, THP-1, U2OS
904557	57	GGT ...	GDH ...	Ribo-seq	GGT	strong	1	sORFs_org_Human	Intronic sORF	Jurkat
406849	228	GTG ...	VFM ...	Ribo-seq	GTG		1	sORFs_org_Human	Intronic sORF	HCT116
2693	51	CTG ...	LDR ...	Ribo-seq	CTG		19	sORFs_org_Human	Intronic sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
904567	105	TGT ...	CSV ...	Ribo-seq	TGT	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
904581	165	GAT ...	DIT ...	Ribo-seq	GAT	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
904559	66	ATA ...	IDS ...	Ribo-seq	ATA		1	sORFs_org_Human	Intronic sORF	Jurkat
904573	45	TCT ...	SGS ...	Ribo-seq	TCT	strong	1	sORFs_org_Human	Intronic sORF	Jurkat
406847	213	GCT ...	AGQ ...	Ribo-seq	GCT		2	sORFs_org_Human	Intronic sORF	HCT116, Jurkat
904577	42	CAG ...	QHM ...	Ribo-seq	CAG	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
101132	282	GTG ...	VIA ...	Ribo-seq	GTG		2	sORFs_org_Human	Intronic sORF	HEK293
283442	39	TTG ...	LQR ...	Ribo-seq	TTG	weak	9	sORFs_org_Human	Intronic sORF	BJ, Blood, HEK293, HeLa, LCL, MDA-MB-231, THP-1
904579	195	TGT ...	CNR ...	Ribo-seq	TGT		1	sORFs_org_Human	Intronic sORF	Jurkat
904565	42	CAC ...	HCA ...	Ribo-seq	CAC		1	sORFs_org_Human	Intronic sORF	Jurkat
904555	30	GAG ...	EWK ...	Ribo-seq	GAG		1	sORFs_org_Human	Intronic sORF	Jurkat
904563	39	CAA ...	QYY ...	Ribo-seq	CAA	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
101134	51	ATG ...	MYQ ...	Ribo-seq	ATG	weak	9	sORFs_org_Human	Intronic sORF	Blood, HAP1, HEK293, HeLa, MDA-MB-231, Monocyte, THP-1
2696	168	TTG ...	LRD ...	Ribo-seq	TTG		26	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
904575	216	GTA ...	VST ...	Ribo-seq	GTA		1	sORFs_org_Human	Intronic sORF	Jurkat
2700	72	GTG ...	VII ...	Ribo-seq	GTG		21	sORFs_org_Human	Intronic sORF	Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, Monocyte, RPE-1, U2OS
1296973	33	ATG ...	MKI ...	Ribo-seq	ATG	moderate	5	sORFs_org_Human	Intronic sORF	Blood, HEK293, HEK293T, HFF, MDA-MB-231
633912	135	TTG ...	LSL ...	Ribo-seq	TTG		7	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, RPE-1, THP-1

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