Transcript 2599 | MetamORF

Transcript

ID CARD

MetamORF ID

2599

ENST00000524817

Name

SWAP70-203

Strand

Biotype

retained_intron

Start-end positions

9664135-9741953

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

HGNC:17070

Aliases

ENSG00000133789,
HGNC:17070, KIAA0640, NCBI:23075,
OFF:SWAP70, SWAP-70, SWAP70

Chr 11

ORFs

31 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1204702	48	ATG ...	MMM ...	Ribo-seq	ATG	moderate	6	sORFs_org_Human	Intronic sORF	BJ, HAP1, HeLa, hES, HFF, MDA-MB-231
633869	105	TTG ...	LKE ...	Ribo-seq	TTG		15	sORFs_org_Human	Intronic sORF	BJ, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1
1204698	72	TTG ...	LPL ...	Ribo-seq	TTG	weak	7	sORFs_org_Human	Intronic sORF	BJ, HAP1, HeLa, hES, HFF, MDA-MB-231, RPE-1
904273	183	CGC ...	RLH ...	Ribo-seq	CGC		1	sORFs_org_Human	Intronic sORF	Jurkat
283073	132	CTG ...	LCT ...	Ribo-seq	CTG		15	sORFs_org_Human	Intronic sORF	BJ, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
2598	57	GTG ...	VSN ...	Ribo-seq	GTG		11	sORFs_org_Human	Intronic sORF	HAP1, HEK293, HeLa, hES, HFF, Jurkat, MDA-MB-231, Monocyte, RPE-1
283089	57	ATG ...	MHL ...	Ribo-seq	ATG	moderate	5	sORFs_org_Human	Intronic sORF	hES, LCL, MDA-MB-231, Monocyte, RPE-1
904277	51	GAC ...	DHS ...	Ribo-seq	GAC		1	sORFs_org_Human	Intronic sORF	Jurkat
633873	120	CTG ...	LKV ...	Ribo-seq	CTG		14	sORFs_org_Human	Intronic sORF	BJ, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1
904267	231	AGC ...	SCS ...	Ribo-seq	AGC		1	sORFs_org_Human	Intronic sORF	Jurkat
283077	192	CTG ...	LIC ...	Ribo-seq	CTG		3	sORFs_org_Human	Intronic sORF	LCL, MDA-MB-231, Monocyte
283085	69	TTG ...	LDP ...	Ribo-seq	TTG	strong	6	sORFs_org_Human	Intronic sORF	HEK293, LCL, MDA-MB-231, Monocyte, RPE-1
283083	72	GTG ...	VLD ...	Ribo-seq	GTG	moderate	7	sORFs_org_Human	Intronic sORF	HEK293, Jurkat, LCL, MDA-MB-231, Monocyte, RPE-1
904269	84	GCC ...	AIW ...	Ribo-seq	GCC		1	sORFs_org_Human	Intronic sORF	Jurkat
904279	153	CGG ...	RQG ...	Ribo-seq	CGG		1	sORFs_org_Human	Intronic sORF	Jurkat
1204700	66	TTG ...	LKS ...	Ribo-seq	TTG	weak	6	sORFs_org_Human	Intronic sORF	BJ, HAP1, HeLa, hES, HFF, MDA-MB-231
904275	165	CCA ...	PGP ...	Ribo-seq	CCA		1	sORFs_org_Human	Intronic sORF	Jurkat
1204696	81	ATG ...	MTQ ...	Ribo-seq	ATG	weak	7	sORFs_org_Human	Intronic sORF	BJ, HAP1, HeLa, hES, HFF, MDA-MB-231, RPE-1
2311185	42	ATG ...	MRV ...	Ribo-seq	ATG	moderate	4	sORFs_org_Human	Intronic sORF	HeLa, hES, HFF, MDA-MB-231
904281	36	GTC ...	VSK ...	Ribo-seq	GTC		1	sORFs_org_Human	Intronic sORF	Jurkat
904271	216	TCT ...	SGT ...	Ribo-seq	TCT		1	sORFs_org_Human	Intronic sORF	Jurkat
283079	144	TTG ...	LTR ...	Ribo-seq	TTG	moderate	4	sORFs_org_Human	Intronic sORF	LCL, MDA-MB-231, Monocyte, RPE-1
2311195	60	CTG ...	LCQ ...	Ribo-seq	CTG	weak	3	sORFs_org_Human	Intronic sORF	MDA-MB-231, RPE-1
283071	93	CTG ...	LLK ...	Ribo-seq	CTG		15	sORFs_org_Human	Intronic sORF	BJ, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
904290	66	GAC ...	DPL ...	Ribo-seq	GAC	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
904287	39	TTT ...	FGK ...	Ribo-seq	TTT		1	sORFs_org_Human	Intronic sORF	Jurkat
904284	45	ATG ...	MMR ...	Ribo-seq	ATG	moderate	6	sORFs_org_Human	Intronic sORF	HAP1, HeLa, hES, HFF, Jurkat, MDA-MB-231
283075	123	GTG ...	VLK ...	Ribo-seq	GTG		16	sORFs_org_Human	Intronic sORF	BJ, guo_2014, HAP1, HEK293, HeLa, hES, HFF, Jurkat, LCL, MDA-MB-231, RPE-1, THP-1
904292	219	TCT ...	SED ...	Ribo-seq	TCT		1	sORFs_org_Human	Intronic sORF	Jurkat
283087	105	GTG ...	VSK ...	Ribo-seq	GTG	weak	4	sORFs_org_Human	Intronic sORF	LCL, MDA-MB-231, Monocyte, RPE-1
283081	135	TTG ...	LNS ...	Ribo-seq	TTG	moderate	4	sORFs_org_Human	Intronic sORF	LCL, MDA-MB-231, Monocyte, RPE-1

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