Transcript 284651

Transcript

ID CARD

MetamORF ID

284651

ENST00000524594

Name

ARHGAP1-202

Strand

Biotype

retained_intron

Start-end positions

46695083-46700615

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CAC ...

Genome browsers

UCSC

Gene

HGNC:673

Aliases

ARHGAP1,
Cdc42GAP, CDC42GAP, ENSG00000175220,
HGNC:673, NCBI:392, OFF:ARHGAP1,
p50rhoGAP, RhoGAP

Chr 11

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1316592	117	CTG ...	LNQ ...	Ribo-seq	CTG		3	sORFs_org_Human	Intronic sORF	HeLa, hES, HFF
1439806	102	CTG ...	LAS ...	Ribo-seq	CTG		2	sORFs_org_Human	Intronic sORF	HeLa, HFF
634390	138	TTG ...	LDD ...	Ribo-seq	TTG		11	sORFs_org_Human	Intronic sORF	BJ, Brain, HEK293, HeLa, hES, HFF, RPE-1, THP-1
284650	51	CTG ...	LGQ ...	Ribo-seq	CTG	moderate	14	sORFs_org_Human	Intronic sORF	BJ, HAP1, HEK293, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1
407291	171	GAT ...	DPL ...	Ribo-seq	GAT		5	sORFs_org_Human	Intronic sORF	HCT116, HEK293, HeLa, Jurkat, THP-1
906495	150	GAT ...	DDL ...	Ribo-seq	GAT		1	sORFs_org_Human	Intronic sORF	Jurkat
2313399	51	TTG ...	LPS ...	Ribo-seq	TTG		1	sORFs_org_Human	Intronic sORF	MDA-MB-231
407293	225	GCA ...	AEG ...	Ribo-seq	GCA		2	sORFs_org_Human	Intronic sORF	HCT116, Jurkat
284654	63	CTG ...	LQG ...	Ribo-seq	CTG	moderate	13	sORFs_org_Human	Intronic sORF	BJ, HAP1, HeLa, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1987926	42	ATG ...	MTP ...	Ribo-seq	ATG	weak	8	sORFs_org_Human	Intronic sORF	HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
906498	36	CCA ...	PWI ...	Ribo-seq	CCA	weak	4	sORFs_org_Human	Intronic sORF	HEK293, HeLa, Jurkat, THP-1
906505	252	GAT ...	DVC ...	Ribo-seq	GAT		1	sORFs_org_Human	Intronic sORF	Jurkat
906503	228	GTG ...	VAE ...	Ribo-seq	GTG		1	sORFs_org_Human	Intronic sORF	Jurkat
906490	99	GCC ...	ASI ...	Ribo-seq	GCC		1	sORFs_org_Human	Intronic sORF	Jurkat
634394	156	CTG ...	LQD ...	Ribo-seq	CTG		13	sORFs_org_Human	Intronic sORF	BJ, Brain, HEK293, HeLa, hES, HFF, loayza_puch_2016, RPE-1, THP-1
634392	144	CTG ...	LTL ...	Ribo-seq	CTG		12	sORFs_org_Human	Intronic sORF	BJ, Brain, HEK293, HeLa, hES, HFF, Jurkat, RPE-1, THP-1
906492	108	CTG ...	LKL ...	Ribo-seq	CTG		3	sORFs_org_Human	Intronic sORF	HeLa, HFF, Jurkat

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