Transcript 4310 | MetamORF

Transcript

ID CARD

MetamORF ID

4310

ENST00000523235

Name

FADS2-213

Strand

Biotype

retained_intron

Start-end positions

61854187-61867347

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTG ...

Genome browsers

UCSC

Gene

HGNC:3575

Aliases

D6D,
DES6, ENSG00000134824, FADS2,
FADSD6, HGNC:3575, LLCDL2,
NCBI:9415, OFF:FADS2, SLL0262,
TU13

Chr 11

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
286204	93	GTG ...	VLM ...	Ribo-seq	GTG		7	sORFs_org_Human	Intronic sORF	Brain, guo_2014, hES, LCL, RPE-1, THP-1, U2OS
908170	99	GTC ...	VPE ...	Ribo-seq	GTC	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
908134	48	CCC ...	PHV ...	Ribo-seq	CCC	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
908140	204	ACC ...	TMI ...	Ribo-seq	ACC		1	sORFs_org_Human	Intronic sORF	Jurkat
1440119	114	CTG ...	LPY ...	Ribo-seq	CTG		1	sORFs_org_Human	Intronic sORF	HeLa
937737	123	CTG ...	LKY ...	Ribo-seq	CTG		4	sORFs_org_Human	Intronic sORF	Brain, guo_2014, HEK293, HeLa
908130	66	TGG ...	WAA ...	Ribo-seq	TGG	strong	1	sORFs_org_Human	Intronic sORF	Jurkat
102272	51	TTG ...	LGR ...	Ribo-seq	TTG	moderate	17	sORFs_org_Human	Intronic sORF	BJ, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
286206	87	ATG ...	MIS ...	Ribo-seq	ATG		9	sORFs_org_Human	Intronic sORF	BJ, Brain, guo_2014, hES, LCL, RPE-1, THP-1, U2OS
937739	129	CTG ...	LTF ...	Ribo-seq	CTG		1	sORFs_org_Human	Intronic sORF	Brain
3200440	249	CCG ...	PPL ...	Ribo-seq	CCG		1	sORFs_org_Human	Intronic sORF	HEK293
908138	213	ATC ...	IIM ...	Ribo-seq	ATC		1	sORFs_org_Human	Intronic sORF	Jurkat
4323	30	CTG ...	LWL ...	Ribo-seq	CTG	moderate	23	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
4321	48	CTG ...	LKK ...	Ribo-seq	CTG	weak	25	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
4309	84	CTG ...	LSL ...	Ribo-seq	CTG		14	sORFs_org_Human	Intronic sORF	Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, RPE-1, THP-1, U2OS
908128	63	CGG ...	RQE ...	Ribo-seq	CGG		1	sORFs_org_Human	Intronic sORF	Jurkat
1008302	105	TTG ...	LQV ...	Ribo-seq	TTG		1	sORFs_org_Human	Intronic sORF	guo_2014
908175	84	TGG ...	WEA ...	Ribo-seq	TGG	strong	1	sORFs_org_Human	Intronic sORF	Jurkat
2616375	69	GGA ...	GRL ...	Ribo-seq	GGA	moderate	2	sORFs_org_Human	Intronic sORF	HeLa, THP-1
102270	57	CTG ...	LQL ...	Ribo-seq	CTG		14	sORFs_org_Human	Intronic sORF	BJ, Brain, HAP1, HEK293, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
407686	30	CCA ...	PDH ...	Ribo-seq	CCA	strong	2	sORFs_org_Human	Intronic sORF	HCT116, HEK293
286208	102	ATG ...	MDA ...	Ribo-seq	ATG		9	sORFs_org_Human	Intronic sORF	Brain, Flp-In_T-REx-293, guo_2014, HAP1, hES, HFF, LCL, RPE-1, U2OS
908136	33	GTA ...	VPD ...	Ribo-seq	GTA	weak	3	sORFs_org_Human	Intronic sORF	HeLa, Jurkat, THP-1
908132	240	CTC ...	LIP ...	Ribo-seq	CTC		1	sORFs_org_Human	Intronic sORF	Jurkat

Export data