Transcript 304852

Transcript

ID CARD

MetamORF ID

304852

ENST00000500741

Name

NRAV-201

Strand

Biotype

antisense_RNA

Start-end positions

120490328-120495940

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CAC ...

Genome browsers

UCSC

Gene

HGNC:48588

Aliases

DYNLL1-AS1,
ENSG00000248008, HGNC:48588, NCBI:100506668,
NRAV, OFF:NRAV

Chr 12

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1832054	141	CTG ...	LRD ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Overlapping sORF	HeLa
1739442	33	ATG ...	MRF ...	Ribo-seq	ATG	moderate	3	sORFs_org_Human	Overlapping sORF	Blood, MDA-MB-231, RPE-1
1832042	45	CTG ...	LSF ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Overlapping sORF	HeLa
542078	123	GTG ...	VEP ...	Ribo-seq	GTG		3	sORFs_org_Human	Overlapping sORF	HeLa, RPE-1, U2OS
304851	30	GTG ...	VTE ...	Ribo-seq	GTG	weak	2	sORFs_org_Human	Overlapping sORF	HeLa, LCL
1832044	51	GTG ...	VEL ...	Ribo-seq	GTG	strong	1	sORFs_org_Human	Overlapping sORF	HeLa
2001325	63	ATG ...	MSP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	Overlapping sORF	HeLa
2695731	42	ATG ...	MKK ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	Overlapping sORF	RPE-1
1832052	120	CTG ...	LQL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Overlapping sORF	HeLa
1832056	63	CTG ...	LTL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Overlapping sORF	HeLa
1832048	99	CTG ...	LFL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Overlapping sORF	HeLa
1832050	69	GTG ...	VAC ...	Ribo-seq	GTG	strong	1	sORFs_org_Human	Overlapping sORF	HeLa
2696577	159	ATG ...	MGR ...	Ribo-seq	ATG		1	sORFs_org_Human	Overlapping sORF	RPE-1
705024	54	GAT ...	DEV ...	Ribo-seq	GAT	strong	1	sORFs_org_Human	Overlapping sORF	Jurkat
1832046	57	CTG ...	LAV ...	Ribo-seq	CTG	strong	1	sORFs_org_Human	Overlapping sORF	HeLa
2696574	54	CTG ...	LSG ...	Ribo-seq	CTG		1	sORFs_org_Human	Overlapping sORF	RPE-1
2696579	135	TTG ...	LPG ...	Ribo-seq	TTG		1	sORFs_org_Human	Overlapping sORF	RPE-1

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