Transcript 10761 | MetamORF

Transcript

ID CARD

MetamORF ID

10761

ENST00000498694

Name

CTPS1-212

Strand

Biotype

processed_transcript

Start-end positions

41006064-41011754

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGA ...

Genome browsers

UCSC

Gene

HGNC:2519

Aliases

CTPS,
CTPS1, ENSG00000171793, GATD5,
HGNC:2519, NCBI:1503, OFF:CTPS1

Chr 1

ORFs

43 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
921735	90	GGC ...	GLC ...	Ribo-seq	GGC		1	sORFs_org_Human	ncRNA sORF	Jurkat
643778	195	TTG ...	LLG ...	Ribo-seq	TTG		1	sORFs_org_Human	ncRNA sORF	THP-1
921580	42	ACA ...	TCQ ...	Ribo-seq	ACA		1	sORFs_org_Human	ncRNA sORF	Jurkat
643774	54	TTG ...	LNL ...	Ribo-seq	TTG		1	sORFs_org_Human	ncRNA sORF	THP-1
1096218	75	TTG ...	LEE ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	ncRNA sORF	HEK293
643782	174	CTG ...	LSS ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	THP-1
3200902	36	AGA ...	RTR ...	Ribo-seq	AGA	moderate	1	sORFs_org_Human	ncRNA sORF	HEK293
301207	33	TTG ...	LKE ...	Ribo-seq	TTG	moderate	5	sORFs_org_Human	ncRNA sORF	BJ, HEK293, LCL
301181	84	TTG ...	LKF ...	Ribo-seq	TTG		16	sORFs_org_Human	ncRNA sORF	BJ, guo_2014, HEK293, HeLa, hES, HFF, Jurkat, LCL, RPE-1, THP-1
301149	54	CTG ...	LEK ...	Ribo-seq	CTG	strong	15	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
108143	99	TTG ...	LEE ...	Ribo-seq	TTG		21	sORFs_org_Human	ncRNA sORF	BJ, guo_2014, HAP1, HEK293, HeLa, hES, HFF, Jurkat, LCL, RPE-1, THP-1, U2OS
301151	45	GTG ...	VFG ...	Ribo-seq	GTG	moderate	16	sORFs_org_Human	ncRNA sORF	BJ, Blood, guo_2014, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
10826	30	CTG ...	LKF ...	Ribo-seq	CTG	moderate	20	sORFs_org_Human	ncRNA sORF	Blood, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
10815	108	CTG ...	LSR ...	Ribo-seq	CTG		24	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
921692	69	CAA ...	QDV ...	Ribo-seq	CAA		1	sORFs_org_Human	ncRNA sORF	Jurkat
921715	129	GTT ...	VQY ...	Ribo-seq	GTT		1	sORFs_org_Human	ncRNA sORF	Jurkat
3200919	81	ACC ...	TYS ...	Ribo-seq	ACC	moderate	1	sORFs_org_Human	ncRNA sORF	HEK293
301193	48	TTG ...	LLA ...	Ribo-seq	TTG	moderate	9	sORFs_org_Human	ncRNA sORF	BJ, HEK293, HeLa, LCL, MDA-MB-231, RPE-1
921705	60	GAA ...	EGE ...	Ribo-seq	GAA		1	sORFs_org_Human	ncRNA sORF	Jurkat
921598	33	CCT ...	PVP ...	Ribo-seq	CCT		1	sORFs_org_Human	ncRNA sORF	Jurkat
301262	72	CTG ...	LNS ...	Ribo-seq	CTG		8	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, LCL, THP-1
921594	45	CAA ...	QEE ...	Ribo-seq	CAA		1	sORFs_org_Human	ncRNA sORF	Jurkat
10783	51	ATG ...	MET ...	Ribo-seq	ATG	moderate	14	sORFs_org_Human	ncRNA sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, MDA-MB-231, THP-1, U2OS
921588	78	CCC ...	PRA ...	Ribo-seq	CCC		1	sORFs_org_Human	ncRNA sORF	Jurkat
301203	45	TTG ...	LAK ...	Ribo-seq	TTG	moderate	9	sORFs_org_Human	ncRNA sORF	BJ, HEK293, HeLa, LCL, MDA-MB-231, RPE-1
301266	39	GTG ...	VEA ...	Ribo-seq	GTG	strong	7	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, THP-1
921768	66	AGT ...	SGS ...	Ribo-seq	AGT	strong	1	sORFs_org_Human	ncRNA sORF	Jurkat
921612	48	CTA ...	LWR ...	Ribo-seq	CTA	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
1010656	39	GTG ...	VEL ...	Ribo-seq	GTG		1	sORFs_org_Human	ncRNA sORF	guo_2014
301264	48	GTG ...	VTG ...	Ribo-seq	GTG	moderate	8	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
301205	36	ATG ...	MLK ...	Ribo-seq	ATG	moderate	7	sORFs_org_Human	ncRNA sORF	BJ, HEK293, HeLa, LCL, RPE-1
3200905	138	TTT ...	FVG ...	Ribo-seq	TTT		1	sORFs_org_Human	ncRNA sORF	HEK293
3200897	117	CCA ...	PVW ...	Ribo-seq	CCA		1	sORFs_org_Human	ncRNA sORF	HEK293
921652	108	AAA ...	KKC ...	Ribo-seq	AAA		1	sORFs_org_Human	ncRNA sORF	Jurkat
10781	72	TTG ...	LFC ...	Ribo-seq	TTG		10	sORFs_org_Human	ncRNA sORF	BJ, HEK293, HeLa, hES, THP-1
10760	30	TTG ...	LTL ...	Ribo-seq	TTG		9	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, MDA-MB-231
10817	63	CTG ...	LAS ...	Ribo-seq	CTG		27	sORFs_org_Human	ncRNA sORF	BJ, Blood, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
921774	36	ACC ...	TEL ...	Ribo-seq	ACC	strong	1	sORFs_org_Human	ncRNA sORF	Jurkat
921578	39	CCC ...	PYD ...	Ribo-seq	CCC		1	sORFs_org_Human	ncRNA sORF	Jurkat
10819	54	GTG ...	VGR ...	Ribo-seq	GTG		29	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
3200910	66	CTC ...	LLA ...	Ribo-seq	CTC		1	sORFs_org_Human	ncRNA sORF	HEK293
108141	123	GTG ...	VNP ...	Ribo-seq	GTG		21	sORFs_org_Human	ncRNA sORF	BJ, Flp-In_T-REx-293, guo_2014, HEK293, HeLa, hES, HFF, LCL, RPE-1, THP-1, U2OS
643780	192	TTG ...	LGF ...	Ribo-seq	TTG		1	sORFs_org_Human	ncRNA sORF	THP-1

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