Transcript 94580 | MetamORF

Transcript

ID CARD

MetamORF ID

94580

ENST00000497963

Name

CDC123-208

Strand

Biotype

retained_intron

Start-end positions

12246054-12250319

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CAT ...

Genome browsers

UCSC

Gene

HGNC:16827

Aliases

C10orf7,
CDC123, D123, ENSG00000151465,
HGNC:16827, NCBI:8872, OFF:CDC123

Chr 10

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
893474	102	AGT ...	SDS ...	Ribo-seq	AGT	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
94584	45	TTG ...	LVK ...	Ribo-seq	TTG	moderate	22	sORFs_org_Human	Intronic sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
272988	102	TTG ...	LFF ...	Ribo-seq	TTG	weak	7	sORFs_org_Human	Intronic sORF	HEK293, HeLa, hES, LCL
94592	72	CTG ...	LIS ...	Ribo-seq	CTG		31	sORFs_org_Human	Intronic sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
893468	63	GCG ...	AIL ...	Ribo-seq	GCG		1	sORFs_org_Human	Intronic sORF	Jurkat
272990	87	CTG ...	LCY ...	Ribo-seq	CTG	weak	14	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, THP-1
94596	102	TTG ...	LSY ...	Ribo-seq	TTG	weak	25	sORFs_org_Human	Intronic sORF	Blood, Brain, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
480219	45	TTG ...	LYR ...	Ribo-seq	TTG		12	sORFs_org_Human	Intronic sORF	Blood, Brain, HEK293, HEK293T, HeLa, hES, THP-1
94582	60	TTG ...	LTL ...	Ribo-seq	TTG	weak	23	sORFs_org_Human	Intronic sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
893476	51	TGT ...	CRP ...	Ribo-seq	TGT	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
94586	42	GTG ...	VKS ...	Ribo-seq	GTG	weak	24	sORFs_org_Human	Intronic sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
272986	108	TTG ...	LFL ...	Ribo-seq	TTG	weak	5	sORFs_org_Human	Intronic sORF	HEK293, HeLa, hES, LCL
893464	33	CAG ...	QIH ...	Ribo-seq	CAG	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
893478	60	GGG ...	GED ...	Ribo-seq	GGG	strong	1	sORFs_org_Human	Intronic sORF	Jurkat
94579	138	GTG ...	VWL ...	Ribo-seq	GTG		31	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
94590	90	CTG ...	LFT ...	Ribo-seq	CTG		29	sORFs_org_Human	Intronic sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
94588	93	CTG ...	LLF ...	Ribo-seq	CTG		29	sORFs_org_Human	Intronic sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
893472	156	TCC ...	SPA ...	Ribo-seq	TCC	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
893470	36	AGC ...	SRY ...	Ribo-seq	AGC		1	sORFs_org_Human	Intronic sORF	Jurkat
94594	126	GTG ...	VTV ...	Ribo-seq	GTG	moderate	27	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
893466	87	TTC ...	FTW ...	Ribo-seq	TTC		1	sORFs_org_Human	Intronic sORF	Jurkat

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