Transcript 95790 | MetamORF

Transcript

ID CARD

MetamORF ID

95790

ENST00000495903

Name

ATAD1-203

Strand

Biotype

processed_transcript

Start-end positions

87784552-87841343

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTG ...

Genome browsers

UCSC

Gene

HGNC:25903

Aliases

ATAD1,
ENSG00000138138, FLJ14600, HGNC:25903,
NCBI:84896, OFF:ATAD1

Chr 10

ORFs

28 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
3014216	45	CTG ...	LVP ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	MM1S
404772	78	TGT ...	CFC ...	Ribo-seq	TGT		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
896981	45	AAT ...	NEA ...	Ribo-seq	AAT	strong	1	sORFs_org_Human	ncRNA sORF	Jurkat
630998	36	GTG ...	VGP ...	Ribo-seq	GTG		5	sORFs_org_Human	ncRNA sORF	HeLa, MM1S, RPE-1, THP-1
630990	30	ATG ...	MGL ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human	ncRNA sORF	hES, THP-1
2677955	33	TTG ...	LLL ...	Ribo-seq	TTG		1	sORFs_org_Human	ncRNA sORF	RPE-1
404768	78	ACA ...	TQS ...	Ribo-seq	ACA		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
97793	96	GTG ...	VKN ...	Ribo-seq	GTG		17	sORFs_org_Human	ncRNA sORF	Blood, Brain, guo_2014, HAP1, HEK293, HeLa, hES, HFF, RPE-1, THP-1, U2OS
896973	114	GAT ...	DLK ...	Ribo-seq	GAT		1	sORFs_org_Human	ncRNA sORF	Jurkat
896985	81	ACA ...	TYF ...	Ribo-seq	ACA		1	sORFs_org_Human	ncRNA sORF	Jurkat
524083	42	GTG ...	VFF ...	Ribo-seq	GTG	moderate	3	sORFs_org_Human	ncRNA sORF	hES, THP-1, U2OS
896977	45	GTA ...	VDP ...	Ribo-seq	GTA		1	sORFs_org_Human	ncRNA sORF	Jurkat
95792	84	GTG ...	VTY ...	Ribo-seq	GTG		20	sORFs_org_Human	ncRNA sORF	BJ, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, RPE-1, U2OS
630996	36	ATG ...	MGW ...	Ribo-seq	ATG		11	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, Jurkat, MDA-MB-231, MM1S, RPE-1, THP-1
896993	108	TGC ...	CHS ...	Ribo-seq	TGC		1	sORFs_org_Human	ncRNA sORF	Jurkat
896975	147	AGT ...	SDI ...	Ribo-seq	AGT		1	sORFs_org_Human	ncRNA sORF	Jurkat
896968	126	GAT ...	DKW ...	Ribo-seq	GAT		1	sORFs_org_Human	ncRNA sORF	Jurkat
404770	99	ACA ...	TIF ...	Ribo-seq	ACA		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
896970	156	TTT ...	FIN ...	Ribo-seq	TTT		1	sORFs_org_Human	ncRNA sORF	Jurkat
896983	51	GCA ...	AID ...	Ribo-seq	GCA		1	sORFs_org_Human	ncRNA sORF	Jurkat
896979	69	GAA ...	EMS ...	Ribo-seq	GAA		1	sORFs_org_Human	ncRNA sORF	Jurkat
95789	33	ATG ...	MQL ...	Ribo-seq	ATG	weak	15	sORFs_org_Human	ncRNA sORF	BJ, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
95796	138	TTG ...	LSR ...	Ribo-seq	TTG		27	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, Jurkat, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
276046	78	TTG ...	LFV ...	Ribo-seq	TTG		3	sORFs_org_Human	ncRNA sORF	HEK293T, HeLa, LCL
95794	102	TTG ...	LTI ...	Ribo-seq	TTG		21	sORFs_org_Human	ncRNA sORF	BJ, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, RPE-1, U2OS
896991	48	ATT ...	IPE ...	Ribo-seq	ATT		1	sORFs_org_Human	ncRNA sORF	Jurkat
896987	87	GCA ...	AVT ...	Ribo-seq	GCA		1	sORFs_org_Human	ncRNA sORF	Jurkat
97791	87	GTG ...	VKL ...	Ribo-seq	GTG		16	sORFs_org_Human	ncRNA sORF	Blood, Brain, guo_2014, HAP1, HEK293, HeLa, hES, RPE-1, THP-1, U2OS

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