Transcript 5468 | MetamORF

Transcript

ID CARD

MetamORF ID

5468

ENST00000494836

Name

YIF1A-209

Strand

Biotype

retained_intron

Start-end positions

66284581-66285623

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CCC ...

Genome browsers

UCSC

Gene

HGNC:16688

Aliases

54TM,
ENSG00000174851, FinGER7, HGNC:16688,
NCBI:10897, OFF:YIF1A, YIF1,
YIF1A, YIF1P

Chr 11

ORFs

15 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
5474	138	TTG ...	LRT ...	Ribo-seq	TTG	weak	19	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, guo_2014, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
2904659	252	GTG ...	VLT ...	Ribo-seq	GTG		1	sORFs_org_Human	Intronic sORF	HeLa
530180	36	CTG ...	LQP ...	Ribo-seq	CTG	moderate	3	sORFs_org_Human	Intronic sORF	Blood, MDA-MB-231, U2OS
5467	63	CTG ...	LGA ...	Ribo-seq	CTG	strong	17	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, guo_2014, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
5483	51	CTG ...	LST ...	Ribo-seq	CTG		1	sORFs_org_Human	Intronic sORF	HEK293
2904657	240	CTG ...	LLF ...	Ribo-seq	CTG		1	sORFs_org_Human	Intronic sORF	HeLa
5478	33	CTG ...	LAY ...	Ribo-seq	CTG		9	sORFs_org_Human	Intronic sORF	Brain, HAP1, HEK293, HeLa, loayza_puch_2016
5470	69	CTG ...	LTL ...	Ribo-seq	CTG	weak	18	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, guo_2014, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
2904655	237	CTG ...	LFG ...	Ribo-seq	CTG		1	sORFs_org_Human	Intronic sORF	HeLa
5481	36	CTG ...	LLA ...	Ribo-seq	CTG		6	sORFs_org_Human	Intronic sORF	Brain, HAP1, HEK293, HeLa
5472	123	CTG ...	LGP ...	Ribo-seq	CTG	strong	17	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
5476	147	GTG ...	VRS ...	Ribo-seq	GTG	moderate	21	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
287961	57	ATG ...	MAT ...	Ribo-seq	ATG		11	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, HFF, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, U2OS
2904653	213	GTG ...	VAL ...	Ribo-seq	GTG		1	sORFs_org_Human	Intronic sORF	HeLa
287963	87	GTG ...	VCS ...	Ribo-seq	GTG		13	sORFs_org_Human	Intronic sORF	BJ, Blood, HEK293, HEK293T, HeLa, HFF, LCL, MDA-MB-231, RPE-1, U2OS

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