Transcript 316 | MetamORF

Transcript

ID CARD

MetamORF ID

316

ENST00000494433

Name

PRDX3-203

Strand

Biotype

retained_intron

Start-end positions

119168069-119170988

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TCT ...

Genome browsers

UCSC

Gene

HGNC:9354

Aliases

AOP-1,
AOP1, ENSG00000165672, HGNC:9354,
MER5, NCBI:10935, OFF:PRDX3,
PRDX3, SP-22

Chr 10

ORFs

33 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
318	99	GTG ...	VKA ...	Ribo-seq	GTG		32	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MM1S, RPE-1, THP-1, U2OS
405447	90	GAA ...	ELD ...	Ribo-seq	GAA		3	sORFs_org_Human	Intronic sORF	HCT116, HEK293, Jurkat
326	153	TTG ...	LSV ...	Ribo-seq	TTG		33	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
405443	54	ATC ...	IKP ...	Ribo-seq	ATC	moderate	1	sORFs_org_Human	Intronic sORF	HCT116
899412	168	GGA ...	GVI ...	Ribo-seq	GGA		1	sORFs_org_Human	Intronic sORF	Jurkat
405451	84	TAT ...	YVE ...	Ribo-seq	TAT		3	sORFs_org_Human	Intronic sORF	HCT116, HEK293, Jurkat
3199612	75	ACA ...	THG ...	Ribo-seq	ACA		1	sORFs_org_Human	Intronic sORF	HEK293
1817518	45	ATG ...	MLV ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	Intronic sORF	HeLa
1817522	96	CTG ...	LLL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Intronic sORF	HeLa
1817514	54	ATG ...	MSQ ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	Intronic sORF	HeLa
405464	150	AGC ...	SVN ...	Ribo-seq	AGC		3	sORFs_org_Human	Intronic sORF	HCT116, HEK293, Jurkat
1817512	63	TTG ...	LNL ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Intronic sORF	HeLa
324	132	GTG ...	VGR ...	Ribo-seq	GTG		33	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1817516	30	TTG ...	LVT ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Intronic sORF	HeLa
1817524	123	TTG ...	LKP ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Intronic sORF	HeLa
899398	210	AGC ...	SCF ...	Ribo-seq	AGC	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
328	30	TTG ...	LTP ...	Ribo-seq	TTG	weak	21	sORFs_org_Human	Intronic sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1
315	48	ATG ...	MEK ...	Ribo-seq	ATG		34	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
3199621	162	ATC ...	IKH ...	Ribo-seq	ATC		1	sORFs_org_Human	Intronic sORF	HEK293
405462	48	ACG ...	TIS ...	Ribo-seq	ACG	weak	3	sORFs_org_Human	Intronic sORF	HCT116, HEK293, Jurkat
405460	138	CTC ...	LPV ...	Ribo-seq	CTC		2	sORFs_org_Human	Intronic sORF	HCT116, Jurkat
405458	114	GAA ...	ETL ...	Ribo-seq	GAA		5	sORFs_org_Human	Intronic sORF	HCT116, HEK293, HeLa, Jurkat, THP-1
1817528	81	ATG ...	MCI ...	Ribo-seq	ATG	weak	1	sORFs_org_Human	Intronic sORF	HeLa
320	102	TTG ...	LVK ...	Ribo-seq	TTG		35	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HCT116, HEK293, HEK293T, HeLa, hES, HFF, Jurkat, LCL, loayza_puch_2016, MM1S, RPE-1, THP-1, U2OS
899396	204	TTC ...	FQR ...	Ribo-seq	TTC	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
322	120	GTG ...	VEE ...	Ribo-seq	GTG		33	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MM1S, RPE-1, THP-1, U2OS
405445	33	CCT ...	PTV ...	Ribo-seq	CCT		1	sORFs_org_Human	Intronic sORF	HCT116
3199619	192	TTT ...	FER ...	Ribo-seq	TTT		1	sORFs_org_Human	Intronic sORF	HEK293
405453	93	GCG ...	AFQ ...	Ribo-seq	GCG		2	sORFs_org_Human	Intronic sORF	HCT116, Jurkat
405449	72	CAT ...	HGE ...	Ribo-seq	CAT		3	sORFs_org_Human	Intronic sORF	HCT116, HEK293, Jurkat
899401	39	TCT ...	SAQ ...	Ribo-seq	TCT		1	sORFs_org_Human	Intronic sORF	Jurkat
1817526	141	CTG ...	LRE ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Intronic sORF	HeLa
1817520	96	ATG ...	MVI ...	Ribo-seq	ATG	strong	1	sORFs_org_Human	Intronic sORF	HeLa

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