Transcript 407227

Transcript

ID CARD

MetamORF ID

407227

ENST00000493928

Name

MECR-218

Strand

Biotype

processed_transcript

Start-end positions

29220883-29230942

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCC ...

Genome browsers

UCSC

Gene

HGNC:19691

Aliases

CGI-63,
ENSG00000116353, ETR1, FASN2B,
HGNC:19691, MECR, NCBI:51102,
NRBF1, OFF:MECR

Chr 1

ORFs

9 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
407226	39	TAT ...	YGH ...	Ribo-seq	TAT		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
2674492	228	GTG ...	VLV ...	Ribo-seq	GTG		1	sORFs_org_Human	ncRNA sORF	RPE-1
901684	30	CAC ...	HGD ...	Ribo-seq	CAC		1	sORFs_org_Human	ncRNA sORF	Jurkat
635577	123	CTG ...	LLP ...	Ribo-seq	CTG		7	sORFs_org_Human	ncRNA sORF	HEK293, HEK293T, HeLa, MDA-MB-231, RPE-1, THP-1
1296692	153	GTG ...	VRT ...	Ribo-seq	GTG		2	sORFs_org_Human	ncRNA sORF	HEK293T, RPE-1
2674489	225	TTG ...	LVG ...	Ribo-seq	TTG		1	sORFs_org_Human	ncRNA sORF	RPE-1
901693	102	CAC ...	HGP ...	Ribo-seq	CAC		1	sORFs_org_Human	ncRNA sORF	Jurkat
901699	270	GCT ...	AVT ...	Ribo-seq	GCT		1	sORFs_org_Human	ncRNA sORF	Jurkat
2684384	162	CTG ...	LWR ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	RPE-1

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