Transcript 1617 | MetamORF

Transcript

ID CARD

MetamORF ID

1617

ENST00000490192

Name

TM9SF3-206

Strand

Biotype

processed_transcript

Start-end positions

96543601-96552943

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGA ...

Genome browsers

UCSC

Gene

HGNC:21529

Aliases

ENSG00000077147,
HGNC:21529, NCBI:56889, OFF:TM9SF3,
SMBP, TM9SF3

Chr 10

ORFs

32 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
98080	132	GTG ...	VCG ...	Ribo-seq	GTG	moderate	6	sORFs_org_Human	ncRNA sORF	Brain, HEK293, hES, HFF
901951	234	TCT ...	SPV ...	Ribo-seq	TCT		1	sORFs_org_Human	ncRNA sORF	Jurkat
96010	99	CTG ...	LIF ...	Ribo-seq	CTG		27	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
524349	150	ATG ...	MDK ...	Ribo-seq	ATG	strong	11	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, MDA-MB-231, RPE-1, THP-1, U2OS
96012	135	GTG ...	VHG ...	Ribo-seq	GTG		27	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
98078	30	GTG ...	VAL ...	Ribo-seq	GTG	moderate	7	sORFs_org_Human	ncRNA sORF	Blood, HEK293, MDA-MB-231, RPE-1, U2OS
897769	81	TCT ...	SPV ...	Ribo-seq	TCT		1	sORFs_org_Human	ncRNA sORF	Jurkat
897761	102	ATA ...	IAI ...	Ribo-seq	ATA	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
897763	105	GGT ...	GVW ...	Ribo-seq	GGT	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
277013	57	TTG ...	LVL ...	Ribo-seq	TTG	moderate	18	sORFs_org_Human	ncRNA sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1616	228	GTG ...	VNG ...	Ribo-seq	GTG		23	sORFs_org_Human	ncRNA sORF	BJ, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MM1S, RPE-1, THP-1, U2OS
901953	276	GGA ...	GSM ...	Ribo-seq	GGA		3	sORFs_org_Human	ncRNA sORF	HeLa, Jurkat, THP-1
98088	66	ATG ...	MSD ...	Ribo-seq	ATG	weak	20	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
98082	60	TTG ...	LGH ...	Ribo-seq	TTG	moderate	15	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
897773	123	GGA ...	GSM ...	Ribo-seq	GGA		3	sORFs_org_Human	ncRNA sORF	HeLa, Jurkat, THP-1
404903	57	GCT ...	AVS ...	Ribo-seq	GCT		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
277006	51	CTG ...	LYA ...	Ribo-seq	CTG		2	sORFs_org_Human	ncRNA sORF	guo_2014, LCL
100247	204	CTG ...	LYA ...	Ribo-seq	CTG		20	sORFs_org_Human	ncRNA sORF	BJ, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, RPE-1, THP-1, U2OS
404901	84	ACG ...	TSP ...	Ribo-seq	ACG		1	sORFs_org_Human	ncRNA sORF	HCT116
3218167	93	TTG ...	LVL ...	Ribo-seq	TTG		1	sORFs_org_Human	ncRNA sORF	HeLa
96008	84	CTG ...	LIG ...	Ribo-seq	CTG		26	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
524354	36	TTG ...	LLC ...	Ribo-seq	TTG	weak	10	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, hES, MDA-MB-231, RPE-1, THP-1, U2OS
277011	51	CTG ...	LDV ...	Ribo-seq	CTG	strong	14	sORFs_org_Human	ncRNA sORF	Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
3218169	96	TTG ...	LLV ...	Ribo-seq	TTG		1	sORFs_org_Human	ncRNA sORF	HeLa
98084	75	GTG ...	VNG ...	Ribo-seq	GTG		11	sORFs_org_Human	ncRNA sORF	Brain, guo_2014, HCT116, HEK293, hES, HFF, LCL, MM1S
524352	33	CTG ...	LCL ...	Ribo-seq	CTG	weak	12	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
897767	135	GTT ...	VYW ...	Ribo-seq	GTT	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
524346	102	GTG ...	VWH ...	Ribo-seq	GTG	moderate	9	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, RPE-1, U2OS
897765	129	TGG ...	WGI ...	Ribo-seq	TGG	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
98076	36	ATG ...	MLQ ...	Ribo-seq	ATG	moderate	12	sORFs_org_Human	ncRNA sORF	Blood, HAP1, HEK293, HeLa, hES, MDA-MB-231, RPE-1, THP-1
98086	54	GTG ...	VSL ...	Ribo-seq	GTG		22	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
406195	237	ACG ...	TSP ...	Ribo-seq	ACG		1	sORFs_org_Human	ncRNA sORF	HCT116

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