Transcript 1810 | MetamORF

Transcript

ID CARD

MetamORF ID

1810

ENST00000489349

Name

GOT1-203

Strand

Biotype

processed_transcript

Start-end positions

99397465-99403749

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CTT ...

Genome browsers

UCSC

Gene

HGNC:4432

Aliases

AST1,
ENSG00000120053, GOT1, HGNC:4432,
NCBI:2805, OFF:GOT1

Chr 10

ORFs

29 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
404953	39	GCC ...	ATS ...	Ribo-seq	GCC	moderate	1	sORFs_org_Human	ncRNA sORF	HCT116
96066	42	GTG ...	VAT ...	Ribo-seq	GTG	moderate	12	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HEK293, hES, MDA-MB-231, RPE-1
1631298	99	CTG ...	LIM ...	Ribo-seq	CTG		2	sORFs_org_Human	ncRNA sORF	Flp-In_T-REx-293, HeLa
898019	36	AGT ...	SRE ...	Ribo-seq	AGT	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
898017	105	CAG ...	QME ...	Ribo-seq	CAG		1	sORFs_org_Human	ncRNA sORF	Jurkat
1809	273	GTG ...	VKT ...	Ribo-seq	GTG		27	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
96068	75	GTG ...	VSG ...	Ribo-seq	GTG	moderate	19	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
96084	120	CTG ...	LQV ...	Ribo-seq	CTG		27	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
898014	120	GTC ...	VNE ...	Ribo-seq	GTC	weak	1	sORFs_org_Human	ncRNA sORF	Jurkat
277206	57	CTG ...	LGP ...	Ribo-seq	CTG	moderate	7	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231, RPE-1
1983236	54	TTG ...	LVQ ...	Ribo-seq	TTG	moderate	4	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, hES, MDA-MB-231
96070	96	CTG ...	LPS ...	Ribo-seq	CTG	weak	23	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, Jurkat, MDA-MB-231, RPE-1, THP-1, U2OS
1631295	60	TTG ...	LSI ...	Ribo-seq	TTG	moderate	7	sORFs_org_Human	ncRNA sORF	Blood, Flp-In_T-REx-293, HEK293, HeLa, hES, MDA-MB-231, RPE-1
404957	180	GGT ...	GNV ...	Ribo-seq	GGT		1	sORFs_org_Human	ncRNA sORF	HCT116
96086	147	GTG ...	VVG ...	Ribo-seq	GTG		27	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
934484	93	ATG ...	MSS ...	Ribo-seq	ATG		4	sORFs_org_Human	ncRNA sORF	Brain, Flp-In_T-REx-293, HEK293, HeLa
96088	153	CTG ...	LTV ...	Ribo-seq	CTG		27	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
404955	159	GAC ...	DRI ...	Ribo-seq	GAC		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
1092962	45	ATG ...	MKS ...	Ribo-seq	ATG	weak	10	sORFs_org_Human	ncRNA sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
96078	174	GTG ...	VKT ...	Ribo-seq	GTG		25	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MM1S, RPE-1, U2OS
96082	90	GTG ...	VRI ...	Ribo-seq	GTG		27	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
98199	36	CTG ...	LIK ...	Ribo-seq	CTG	weak	12	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, HFF, LCL, MDA-MB-231, RPE-1, U2OS
96074	123	CTG ...	LVN ...	Ribo-seq	CTG	moderate	24	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
96076	150	CTG ...	LTM ...	Ribo-seq	CTG		23	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, RPE-1, U2OS
406219	279	GGT ...	GNV ...	Ribo-seq	GGT		1	sORFs_org_Human	ncRNA sORF	HCT116
96080	45	GTG ...	VAS ...	Ribo-seq	GTG		19	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
406221	258	GAC ...	DRI ...	Ribo-seq	GAC		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
1812	249	CTG ...	LTM ...	Ribo-seq	CTG		27	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
96072	99	CTG ...	LLP ...	Ribo-seq	CTG	weak	22	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS

Export data