Transcript 10695 | MetamORF

Transcript

ID CARD

MetamORF ID

10695

ENST00000486889

Name

CTPS1-210

Strand

Biotype

processed_transcript

Start-end positions

40997125-41002236

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TTT ...

Genome browsers

UCSC

Gene

HGNC:2519

Aliases

CTPS,
CTPS1, ENSG00000171793, GATD5,
HGNC:2519, NCBI:1503, OFF:CTPS1

Chr 1

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
921467	36	CAC ...	HEV ...	Ribo-seq	CAC	strong	1	sORFs_org_Human	ncRNA sORF	Jurkat
10699	63	CTG ...	LLY ...	Ribo-seq	CTG	moderate	10	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, THP-1
10703	69	ATG ...	MPL ...	Ribo-seq	ATG		14	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, THP-1
921477	75	ACT ...	TPM ...	Ribo-seq	ACT		1	sORFs_org_Human	ncRNA sORF	Jurkat
921494	60	CAT ...	HQP ...	Ribo-seq	CAT		1	sORFs_org_Human	ncRNA sORF	Jurkat
108047	102	TTG ...	LWA ...	Ribo-seq	TTG		13	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, THP-1
921485	51	CTC ...	LWS ...	Ribo-seq	CTC		1	sORFs_org_Human	ncRNA sORF	Jurkat
921503	72	CAC ...	HKL ...	Ribo-seq	CAC		1	sORFs_org_Human	ncRNA sORF	Jurkat
108069	39	CTG ...	LHW ...	Ribo-seq	CTG		13	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, hES, Jurkat, LCL, MDA-MB-231, THP-1
411178	126	TGC ...	CWR ...	Ribo-seq	TGC		1	sORFs_org_Human	ncRNA sORF	HCT116
10705	63	CTG ...	LSL ...	Ribo-seq	CTG		13	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, THP-1
108067	99	CTG ...	LEH ...	Ribo-seq	CTG		5	sORFs_org_Human	ncRNA sORF	guo_2014, HEK293, HeLa
10694	177	TTG ...	LLE ...	Ribo-seq	TTG		15	sORFs_org_Human	ncRNA sORF	guo_2014, HEK293, HeLa, hES, HFF, LCL, THP-1
108045	108	TTG ...	LPL ...	Ribo-seq	TTG		12	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, THP-1
108039	144	TTG ...	LID ...	Ribo-seq	TTG		11	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, THP-1
301043	174	CTG ...	LSN ...	Ribo-seq	CTG		7	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, LCL, THP-1
921455	48	TGT ...	CGQ ...	Ribo-seq	TGT	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
10701	150	GTG ...	VGK ...	Ribo-seq	GTG		12	sORFs_org_Human	ncRNA sORF	guo_2014, HEK293, HeLa, hES, HFF, THP-1
108041	135	ATG ...	MIA ...	Ribo-seq	ATG		13	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, THP-1
10697	174	CTG ...	LET ...	Ribo-seq	CTG		15	sORFs_org_Human	ncRNA sORF	guo_2014, HEK293, HeLa, hES, HFF, LCL, THP-1
301041	183	GTG ...	VYL ...	Ribo-seq	GTG		4	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, LCL, THP-1

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