Transcript 975 | MetamORF

Transcript

ID CARD

MetamORF ID

975

ENST00000486634

Name

PPP1R8-205

Strand

Biotype

processed_transcript

Start-end positions

27850093-27851676

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AAG ...

Genome browsers

UCSC

Gene

HGNC:9296

Aliases

ard-1,
ARD1, ENSG00000117751, HGNC:9296,
NCBI:5511, NIPP-1, NIPP1,
OFF:PPP1R8, PPP1R8, PRO2047

Chr 1

ORFs

34 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
988	156	GTG ...	VDL ...	Ribo-seq	GTG		24	sORFs_org_Human	ncRNA sORF	Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
898663	219	GGC ...	GIH ...	Ribo-seq	GGC		1	sORFs_org_Human	ncRNA sORF	Jurkat
974	201	GTG ...	VWR ...	Ribo-seq	GTG	moderate	4	sORFs_org_Human	ncRNA sORF	Blood, HEK293, MDA-MB-231
981	258	CTG ...	LPP ...	Ribo-seq	CTG		22	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
1386831	270	TTG ...	LPM ...	Ribo-seq	TTG		2	sORFs_org_Human	ncRNA sORF	HEK293, HeLa
898654	240	GAA ...	EAG ...	Ribo-seq	GAA		1	sORFs_org_Human	ncRNA sORF	Jurkat
1386849	219	GTG ...	VPS ...	Ribo-seq	GTG		2	sORFs_org_Human	ncRNA sORF	HEK293, HeLa
1821464	57	TTG ...	LLF ...	Ribo-seq	TTG		1	sORFs_org_Human	ncRNA sORF	HeLa
1386845	231	TTG ...	LTP ...	Ribo-seq	TTG		1	sORFs_org_Human	ncRNA sORF	HEK293
898678	168	CTT ...	LAP ...	Ribo-seq	CTT		1	sORFs_org_Human	ncRNA sORF	Jurkat
1296000	48	GTG ...	VAC ...	Ribo-seq	GTG	moderate	4	sORFs_org_Human	ncRNA sORF	HEK293, HEK293T, HeLa, MDA-MB-231
1821449	102	CTG ...	LVS ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	HeLa
882183	300	GGC ...	GIH ...	Ribo-seq	GGC		1	sORFs_org_Human	ncRNA sORF	Jurkat
979	141	TTG ...	LPS ...	Ribo-seq	TTG	moderate	5	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, MDA-MB-231
898684	96	GTC ...	VYN ...	Ribo-seq	GTC		1	sORFs_org_Human	ncRNA sORF	Jurkat
1010	138	GTG ...	VPS ...	Ribo-seq	GTG		23	sORFs_org_Human	ncRNA sORF	Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
480679	48	ATG ...	MQK ...	Ribo-seq	ATG		6	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HEK293T, hES, MDA-MB-231
1821461	45	TTG ...	LRA ...	Ribo-seq	TTG		1	sORFs_org_Human	ncRNA sORF	HeLa
898682	135	CCG ...	PSA ...	Ribo-seq	CCG		1	sORFs_org_Human	ncRNA sORF	Jurkat
977	189	CTG ...	LAP ...	Ribo-seq	CTG	strong	6	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, MDA-MB-231
283029	39	CTG ...	LHQ ...	Ribo-seq	CTG	moderate	10	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231, RPE-1, THP-1
283036	69	ATG ...	MNP ...	Ribo-seq	ATG		6	sORFs_org_Human	ncRNA sORF	Blood, HEK293, hES, LCL, MDA-MB-231
986	189	TTG ...	LPM ...	Ribo-seq	TTG		24	sORFs_org_Human	ncRNA sORF	Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
2092017	66	ATG ...	MGQ ...	Ribo-seq	ATG	moderate	5	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, MDA-MB-231, RPE-1
898658	225	CCA ...	PHG ...	Ribo-seq	CCA		1	sORFs_org_Human	ncRNA sORF	Jurkat
1821451	99	GTG ...	VSL ...	Ribo-seq	GTG		1	sORFs_org_Human	ncRNA sORF	HeLa
1008	150	TTG ...	LTP ...	Ribo-seq	TTG		23	sORFs_org_Human	ncRNA sORF	Blood, Brain, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
898699	75	AAT ...	NEP ...	Ribo-seq	AAT		1	sORFs_org_Human	ncRNA sORF	Jurkat
1012	126	GTG ...	VNM ...	Ribo-seq	GTG		21	sORFs_org_Human	ncRNA sORF	Blood, Brain, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
1727769	75	ATG ...	MAS ...	Ribo-seq	ATG	moderate	5	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, MDA-MB-231
1386851	207	GTG ...	VNM ...	Ribo-seq	GTG		1	sORFs_org_Human	ncRNA sORF	HEK293
882194	249	CTT ...	LAP ...	Ribo-seq	CTT		1	sORFs_org_Human	ncRNA sORF	Jurkat
1386837	237	GTG ...	VDL ...	Ribo-seq	GTG		1	sORFs_org_Human	ncRNA sORF	HEK293
1727767	96	GTG ...	VKQ ...	Ribo-seq	GTG	moderate	4	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, MDA-MB-231

Export data