Transcript 94645 | MetamORF

Transcript

ID CARD

MetamORF ID

94645

ENST00000485947

Name

VIM-205

Strand

Biotype

processed_transcript

Start-end positions

17229291-17231093

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCT ...

Genome browsers

UCSC

Gene

HGNC:12692

Aliases

ENSG00000026025,
HGNC:12692, NCBI:7431, OFF:VIM,
VIM

Chr 10

ORFs

77 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
94673	36	CTG ...	LAE ...	Ribo-seq	CTG		32	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
893822	51	CCG ...	PLR ...	Ribo-seq	CCG	weak	3	sORFs_org_Human	ncRNA sORF	HeLa, Jurkat, THP-1
3199178	78	CTA ...	LTN ...	Ribo-seq	CTA		1	sORFs_org_Human	ncRNA sORF	HEK293
1309657	150	GGC ...	GQG ...	Ribo-seq	GGC		1	sORFs_org_Human	ncRNA sORF	HEK293
1309655	33	CAA ...	QRE ...	Ribo-seq	CAA	weak	4	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, THP-1
94661	177	CTG ...	LLA ...	Ribo-seq	CTG		34	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
94649	255	GTG ...	VEL ...	Ribo-seq	GTG		34	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
94651	249	CTG ...	LQE ...	Ribo-seq	CTG		34	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
893790	114	CAT ...	HRH ...	Ribo-seq	CAT	moderate	5	sORFs_org_Human	ncRNA sORF	BJ, HEK293, HeLa, Jurkat, THP-1
1301338	126	GCG ...	AGA ...	Ribo-seq	GCG		1	sORFs_org_Human	ncRNA sORF	BJ
893851	75	CGA ...	RGG ...	Ribo-seq	CGA		3	sORFs_org_Human	ncRNA sORF	HeLa, Jurkat, THP-1
893844	111	GAG ...	EMR ...	Ribo-seq	GAG		3	sORFs_org_Human	ncRNA sORF	HeLa, Jurkat, THP-1
893826	210	AAG ...	KVR ...	Ribo-seq	AAG		2	sORFs_org_Human	ncRNA sORF	HEK293, Jurkat
893804	108	CCG ...	PGC ...	Ribo-seq	CCG	moderate	3	sORFs_org_Human	ncRNA sORF	HeLa, Jurkat, THP-1
893806	108	GGT ...	GAA ...	Ribo-seq	GGT	moderate	4	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, Jurkat, THP-1
893838	165	AGG ...	RQV ...	Ribo-seq	AGG		3	sORFs_org_Human	ncRNA sORF	HeLa, Jurkat, THP-1
893788	150	CCG ...	PGA ...	Ribo-seq	CCG	moderate	2	sORFs_org_Human	ncRNA sORF	HEK293, Jurkat
1301511	171	GCG ...	AGA ...	Ribo-seq	GCG		1	sORFs_org_Human	ncRNA sORF	BJ
902108	96	CGA ...	RGH ...	Ribo-seq	CGA		4	sORFs_org_Human	ncRNA sORF	BJ, HeLa, Jurkat, THP-1
1305405	177	TCT ...	STP ...	Ribo-seq	TCT	moderate	1	sORFs_org_Human	ncRNA sORF	BJ
893808	93	GGA ...	GLG ...	Ribo-seq	GGA	moderate	3	sORFs_org_Human	ncRNA sORF	HeLa, Jurkat, THP-1
2615428	165	GGG ...	GRR ...	Ribo-seq	GGG	weak	2	sORFs_org_Human	ncRNA sORF	HeLa, THP-1
893802	141	GCT ...	APL ...	Ribo-seq	GCT	weak	4	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, Jurkat, THP-1
893834	189	CGA ...	RAR ...	Ribo-seq	CGA		3	sORFs_org_Human	ncRNA sORF	HeLa, Jurkat, THP-1
902102	120	CGA ...	RGG ...	Ribo-seq	CGA		3	sORFs_org_Human	ncRNA sORF	HeLa, Jurkat, THP-1
2615465	48	GAG ...	ERD ...	Ribo-seq	GAG		2	sORFs_org_Human	ncRNA sORF	HeLa, THP-1
893798	156	GTA ...	VCH ...	Ribo-seq	GTA	weak	3	sORFs_org_Human	ncRNA sORF	HeLa, Jurkat, THP-1
2615449	33	CGA ...	RQG ...	Ribo-seq	CGA	weak	2	sORFs_org_Human	ncRNA sORF	HeLa, THP-1
893846	96	CGC ...	RRQ ...	Ribo-seq	CGC		3	sORFs_org_Human	ncRNA sORF	HeLa, Jurkat, THP-1
893816	54	ACA ...	TPS ...	Ribo-seq	ACA	weak	4	sORFs_org_Human	ncRNA sORF	BJ, HeLa, Jurkat, THP-1
1305423	228	TTC ...	FAN ...	Ribo-seq	TTC		1	sORFs_org_Human	ncRNA sORF	BJ
893786	204	GAC ...	DAA ...	Ribo-seq	GAC	strong	3	sORFs_org_Human	ncRNA sORF	BJ, HEK293, Jurkat
94657	207	GTG ...	VRF ...	Ribo-seq	GTG		34	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
893812	72	CGC ...	RWP ...	Ribo-seq	CGC	weak	3	sORFs_org_Human	ncRNA sORF	HeLa, Jurkat, THP-1
893832	108	AGA ...	RSC ...	Ribo-seq	AGA	moderate	3	sORFs_org_Human	ncRNA sORF	HeLa, Jurkat, THP-1
2615420	264	GAG ...	ELQ ...	Ribo-seq	GAG	moderate	2	sORFs_org_Human	ncRNA sORF	HeLa, THP-1
893824	150	CCA ...	PTT ...	Ribo-seq	CCA	weak	4	sORFs_org_Human	ncRNA sORF	BJ, HeLa, Jurkat, THP-1
1305395	102	CCG ...	PQP ...	Ribo-seq	CCG	weak	1	sORFs_org_Human	ncRNA sORF	BJ
94655	162	ATG ...	MTA ...	Ribo-seq	ATG	weak	32	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
2615426	192	CAG ...	QPQ ...	Ribo-seq	CAG	weak	2	sORFs_org_Human	ncRNA sORF	HeLa, THP-1
1301341	81	CAG ...	QLT ...	Ribo-seq	CAG		3	sORFs_org_Human	ncRNA sORF	BJ, HeLa, THP-1
893796	210	CGC ...	RAA ...	Ribo-seq	CGC	moderate	3	sORFs_org_Human	ncRNA sORF	HeLa, Jurkat, THP-1
3199181	60	CGC ...	RVE ...	Ribo-seq	CGC		1	sORFs_org_Human	ncRNA sORF	HEK293
893818	48	CAA ...	QEH ...	Ribo-seq	CAA	strong	5	sORFs_org_Human	ncRNA sORF	BJ, HEK293, HeLa, Jurkat, THP-1
94665	132	CTG ...	LGD ...	Ribo-seq	CTG		34	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
94659	198	CTG ...	LEQ ...	Ribo-seq	CTG		34	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
94671	51	GTG ...	VER ...	Ribo-seq	GTG		34	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, Skeletal_muscle, THP-1, U2OS
902104	129	AGC ...	SPR ...	Ribo-seq	AGC		5	sORFs_org_Human	ncRNA sORF	BJ, HEK293, HeLa, Jurkat, THP-1
893794	222	CCT ...	PTA ...	Ribo-seq	CCT	moderate	4	sORFs_org_Human	ncRNA sORF	BJ, HeLa, Jurkat, THP-1
1301334	48	TCT ...	STR ...	Ribo-seq	TCT	moderate	1	sORFs_org_Human	ncRNA sORF	BJ
902110	195	GGG ...	GGP ...	Ribo-seq	GGG		4	sORFs_org_Human	ncRNA sORF	BJ, HeLa, Jurkat, THP-1
94647	135	CTG ...	LPC ...	Ribo-seq	CTG	weak	32	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
893842	150	GGG ...	GGP ...	Ribo-seq	GGG		4	sORFs_org_Human	ncRNA sORF	BJ, HeLa, Jurkat, THP-1
893853	51	CGA ...	RGH ...	Ribo-seq	CGA		4	sORFs_org_Human	ncRNA sORF	BJ, HeLa, Jurkat, THP-1
902112	210	AGG ...	RQV ...	Ribo-seq	AGG		3	sORFs_org_Human	ncRNA sORF	HeLa, Jurkat, THP-1
893848	84	AGC ...	SPR ...	Ribo-seq	AGC		5	sORFs_org_Human	ncRNA sORF	BJ, HEK293, HeLa, Jurkat, THP-1
893830	189	CAG ...	QNK ...	Ribo-seq	CAG		3	sORFs_org_Human	ncRNA sORF	HeLa, Jurkat, THP-1
893792	231	CCG ...	PHL ...	Ribo-seq	CCG	weak	4	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, Jurkat, THP-1
893800	147	CCA ...	PRA ...	Ribo-seq	CCA	moderate	3	sORFs_org_Human	ncRNA sORF	HeLa, Jurkat, THP-1
2616012	204	GTC ...	VAP ...	Ribo-seq	GTC		2	sORFs_org_Human	ncRNA sORF	HeLa, THP-1
3199850	87	CAT ...	HAP ...	Ribo-seq	CAT		1	sORFs_org_Human	ncRNA sORF	HEK293
94663	174	CTG ...	LAE ...	Ribo-seq	CTG		34	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
1305398	291	CGG ...	RRP ...	Ribo-seq	CGG	moderate	3	sORFs_org_Human	ncRNA sORF	BJ, HeLa, THP-1
1305401	222	CAG ...	QPG ...	Ribo-seq	CAG	weak	3	sORFs_org_Human	ncRNA sORF	BJ, HeLa, THP-1
893840	159	GTC ...	VAP ...	Ribo-seq	GTC		3	sORFs_org_Human	ncRNA sORF	HeLa, Jurkat, THP-1
902106	234	CGA ...	RAR ...	Ribo-seq	CGA		1	sORFs_org_Human	ncRNA sORF	Jurkat
94653	240	CTG ...	LND ...	Ribo-seq	CTG		34	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
893814	66	CCG ...	PTP ...	Ribo-seq	CCG	weak	5	sORFs_org_Human	ncRNA sORF	BJ, Breast, HeLa, Jurkat, THP-1
893820	39	ACA ...	TPA ...	Ribo-seq	ACA	moderate	5	sORFs_org_Human	ncRNA sORF	BJ, HEK293, HeLa, Jurkat, THP-1
1309647	171	GCG ...	APS ...	Ribo-seq	GCG	moderate	1	sORFs_org_Human	ncRNA sORF	HEK293
94669	87	GTG ...	VDQ ...	Ribo-seq	GTG		34	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
94667	99	CTG ...	LRR ...	Ribo-seq	CTG		34	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
2615458	126	GAC ...	DLY ...	Ribo-seq	GAC		2	sORFs_org_Human	ncRNA sORF	HeLa, THP-1
2615417	57	GGA ...	GCS ...	Ribo-seq	GGA	moderate	2	sORFs_org_Human	ncRNA sORF	HeLa, THP-1
1305421	36	CAC ...	HQR ...	Ribo-seq	CAC	weak	1	sORFs_org_Human	ncRNA sORF	BJ
94644	150	ATG ...	MPR ...	Ribo-seq	ATG	weak	32	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
893836	156	CTC ...	LKG ...	Ribo-seq	CTC		3	sORFs_org_Human	ncRNA sORF	HeLa, Jurkat, THP-1

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