Transcript 2086 | MetamORF

Transcript

ID CARD

MetamORF ID

2086

ENST00000484775

Name

TRNAU1AP-206

Strand

Biotype

processed_transcript

Start-end positions

28560633-28577775

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GAT ...

Genome browsers

UCSC

Gene

HGNC:30813

Aliases

ENSG00000180098,
FLJ20503, HGNC:30813, NCBI:54952,
OFF:TRNAU1AP, SECP43, TRNAU1AP,
TRSPAP1

Chr 1

ORFs

41 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
284799	93	CTG ...	LEQ ...	Ribo-seq	CTG		15	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
1728987	30	CTG ...	LSI ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	ncRNA sORF	Blood
100916	123	CTG ...	LDV ...	Ribo-seq	CTG	moderate	24	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
100924	39	CTG ...	LDT ...	Ribo-seq	CTG	moderate	12	sORFs_org_Human	ncRNA sORF	Flp-In_T-REx-293, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, U2OS
284813	54	CTG ...	LRP ...	Ribo-seq	CTG	weak	7	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231, RPE-1
900451	129	CAG ...	QWG ...	Ribo-seq	CAG		1	sORFs_org_Human	ncRNA sORF	Jurkat
2085	42	CTG ...	LNY ...	Ribo-seq	CTG		19	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
284801	30	GTG ...	VPG ...	Ribo-seq	GTG	moderate	5	sORFs_org_Human	ncRNA sORF	BJ, LCL, MDA-MB-231, MM1S
900418	102	ACA ...	TDE ...	Ribo-seq	ACA		1	sORFs_org_Human	ncRNA sORF	Jurkat
481216	72	ATG ...	MTR ...	Ribo-seq	ATG		5	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293T, HeLa, MDA-MB-231
100920	75	CTG ...	LYD ...	Ribo-seq	CTG	moderate	22	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, Jurkat, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
406880	99	GAT ...	DEL ...	Ribo-seq	GAT		1	sORFs_org_Human	ncRNA sORF	HCT116
1296444	57	CTG ...	LRS ...	Ribo-seq	CTG		3	sORFs_org_Human	ncRNA sORF	Blood, HEK293T, MDA-MB-231
284795	36	ATG ...	MQG ...	Ribo-seq	ATG		4	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, LCL
900435	114	AGT ...	SII ...	Ribo-seq	AGT		1	sORFs_org_Human	ncRNA sORF	Jurkat
100922	63	CTG ...	LMD ...	Ribo-seq	CTG	moderate	19	sORFs_org_Human	ncRNA sORF	Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
635207	48	CTG ...	LGS ...	Ribo-seq	CTG		12	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1
1296446	33	ATG ...	MGN ...	Ribo-seq	ATG		3	sORFs_org_Human	ncRNA sORF	Blood, HEK293T, MDA-MB-231
2106	81	CTG ...	LYE ...	Ribo-seq	CTG		16	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
2108	33	GTG ...	VVL ...	Ribo-seq	GTG		15	sORFs_org_Human	ncRNA sORF	BJ, guo_2014, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
481214	87	ATG ...	MLS ...	Ribo-seq	ATG		6	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293T, HeLa, hES, MDA-MB-231
900443	141	AAC ...	NYY ...	Ribo-seq	AAC		1	sORFs_org_Human	ncRNA sORF	Jurkat
635204	75	CTG ...	LTE ...	Ribo-seq	CTG		13	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1
100926	30	GTG ...	VSS ...	Ribo-seq	GTG	moderate	8	sORFs_org_Human	ncRNA sORF	HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1
284736	36	CTG ...	LLC ...	Ribo-seq	CTG	weak	10	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231, RPE-1, THP-1
1990149	39	TTG ...	LLS ...	Ribo-seq	TTG		2	sORFs_org_Human	ncRNA sORF	HeLa
1728997	45	CTG ...	LSG ...	Ribo-seq	CTG	weak	3	sORFs_org_Human	ncRNA sORF	Blood, HEK293, MDA-MB-231
284797	111	GTG ...	VKF ...	Ribo-seq	GTG		14	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
100878	198	GTG ...	VEY ...	Ribo-seq	GTG		11	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, RPE-1
1296433	75	TTG ...	LQI ...	Ribo-seq	TTG		3	sORFs_org_Human	ncRNA sORF	Blood, HEK293T, MDA-MB-231
1136206	81	TTG ...	LAT ...	Ribo-seq	TTG		7	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, RPE-1
900404	63	CCA ...	PQL ...	Ribo-seq	CCA		1	sORFs_org_Human	ncRNA sORF	Jurkat
1315483	60	TTG ...	LHK ...	Ribo-seq	TTG		6	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, RPE-1
900494	69	GAC ...	DAL ...	Ribo-seq	GAC	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
284803	54	GTG ...	VGL ...	Ribo-seq	GTG		15	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
1508703	30	ATG ...	MAI ...	Ribo-seq	ATG		3	sORFs_org_Human	ncRNA sORF	BJ, HeLa, MDA-MB-231
2099	108	CTG ...	LTP ...	Ribo-seq	CTG		17	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
100918	117	GTG ...	VTE ...	Ribo-seq	GTG	moderate	23	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
2091	117	GTG ...	VGD ...	Ribo-seq	GTG		17	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
2101	96	GTG ...	VDD ...	Ribo-seq	GTG		15	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
635209	33	GTG ...	VRL ...	Ribo-seq	GTG		13	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1

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