Transcript 97666 | MetamORF

Transcript

ID CARD

MetamORF ID

97666

ENST00000484760

Name

POLR3A-204

Strand

Biotype

processed_transcript

Start-end positions

78013086-78020173

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

HGNC:30074

Aliases

ENSG00000148606,
HGNC:30074, hRPC155, NCBI:11128,
OFF:POLR3A, POLR3A, RPC1,
RPC155

Chr 10

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
97670	72	CTG ...	LFN ...	Ribo-seq	CTG		2	sORFs_org_Human	ncRNA sORF	HEK293, hES
896660	123	CTC ...	LKY ...	Ribo-seq	CTC		1	sORFs_org_Human	ncRNA sORF	Jurkat
2299078	42	ATG ...	MWC ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	ncRNA sORF	MDA-MB-231
100081	240	GTG ...	VLF ...	Ribo-seq	GTG		1	sORFs_org_Human	ncRNA sORF	HEK293
100083	243	GTG ...	VVL ...	Ribo-seq	GTG		1	sORFs_org_Human	ncRNA sORF	HEK293
275750	66	TTG ...	LHI ...	Ribo-seq	TTG		1	sORFs_org_Human	ncRNA sORF	LCL
97672	75	GTG ...	VLF ...	Ribo-seq	GTG		2	sORFs_org_Human	ncRNA sORF	HEK293, hES
100075	207	TTG ...	LSI ...	Ribo-seq	TTG		1	sORFs_org_Human	ncRNA sORF	HEK293
97665	42	TTG ...	LSI ...	Ribo-seq	TTG		3	sORFs_org_Human	ncRNA sORF	HEK293, hES
97668	51	CTG ...	LHK ...	Ribo-seq	CTG		3	sORFs_org_Human	ncRNA sORF	HEK293, hES
100077	216	CTG ...	LHK ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	HEK293
275752	69	TTG ...	LLH ...	Ribo-seq	TTG		1	sORFs_org_Human	ncRNA sORF	LCL
1133674	84	TTG ...	LRK ...	Ribo-seq	TTG		3	sORFs_org_Human	ncRNA sORF	HEK293, hES, MDA-MB-231
1718444	45	GTG ...	VSV ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	ncRNA sORF	Blood
896664	93	ATC ...	INF ...	Ribo-seq	ATC		1	sORFs_org_Human	ncRNA sORF	Jurkat
2299084	51	CTG ...	LRF ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	ncRNA sORF	HEK293, MDA-MB-231
896662	75	CTG ...	LVQ ...	Ribo-seq	CTG		4	sORFs_org_Human	ncRNA sORF	BJ, HEK293, hES, Jurkat
2299075	51	ATG ...	MSV ...	Ribo-seq	ATG	weak	1	sORFs_org_Human	ncRNA sORF	MDA-MB-231
97674	78	GTG ...	VVL ...	Ribo-seq	GTG		2	sORFs_org_Human	ncRNA sORF	HEK293, hES
97676	159	TTG ...	LKY ...	Ribo-seq	TTG		4	sORFs_org_Human	ncRNA sORF	HEK293, hES, MDA-MB-231
2299080	48	ATG ...	MEM ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	ncRNA sORF	MDA-MB-231
100079	237	CTG ...	LFN ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	HEK293
901679	288	CTC ...	LKY ...	Ribo-seq	CTC		1	sORFs_org_Human	ncRNA sORF	Jurkat
896658	120	TTT ...	FDG ...	Ribo-seq	TTT	strong	1	sORFs_org_Human	ncRNA sORF	Jurkat

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