Transcript 1095 | MetamORF

Transcript

ID CARD

MetamORF ID

1095

ENST00000484741

Name

NET1-205

Strand

Biotype

processed_transcript

Start-end positions

5454381-5456530

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTC ...

Genome browsers

UCSC

Gene

HGNC:14592

Aliases

ARHGEF8,
ENSG00000173848, HGNC:14592, NCBI:10276,
NET1, NET1A, OFF:NET1

Chr 10

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1132542	207	TTG ...	LKK ...	Ribo-seq	TTG		7	sORFs_org_Human	ncRNA sORF	BJ, HEK293, hES, HFF, RPE-1
893058	216	TAC ...	YIF ...	Ribo-seq	TAC	weak	1	sORFs_org_Human	ncRNA sORF	Jurkat
893056	171	GAC ...	DKL ...	Ribo-seq	GAC		1	sORFs_org_Human	ncRNA sORF	Jurkat
403915	189	GTT ...	VLT ...	Ribo-seq	GTT	weak	1	sORFs_org_Human	ncRNA sORF	HCT116
1497498	84	ATG ...	MKS ...	Ribo-seq	ATG		4	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, MDA-MB-231
94452	207	CTG ...	LFQ ...	Ribo-seq	CTG	weak	12	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
94454	192	TTG ...	LVL ...	Ribo-seq	TTG	strong	11	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
190216	102	CTG ...	LLK ...	Ribo-seq	CTG		6	sORFs_org_Human	ncRNA sORF	HEK293, hES, HFF, RPE-1
1497496	129	GTG ...	VNP ...	Ribo-seq	GTG		4	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, MDA-MB-231
1497500	42	GTG ...	VPW ...	Ribo-seq	GTG		4	sORFs_org_Human	ncRNA sORF	BJ, Blood, MDA-MB-231, RPE-1
1497502	33	ATG ...	MGS ...	Ribo-seq	ATG		4	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, MDA-MB-231
272627	39	GTG ...	VPV ...	Ribo-seq	GTG	weak	6	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231
99801	243	CTG ...	LRS ...	Ribo-seq	CTG		11	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
190218	240	TTG ...	LII ...	Ribo-seq	TTG		8	sORFs_org_Human	ncRNA sORF	BJ, HEK293, hES, HFF, RPE-1
1097	261	CTG ...	LLC ...	Ribo-seq	CTG		12	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
94456	186	CTG ...	LTR ...	Ribo-seq	CTG	moderate	9	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, hES, HFF, RPE-1
1094	264	GTG ...	VLL ...	Ribo-seq	GTG		12	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
190214	69	TTG ...	LEF ...	Ribo-seq	TTG	moderate	7	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, MDA-MB-231, RPE-1
94450	30	CTG ...	LMF ...	Ribo-seq	CTG		9	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, hES, MDA-MB-231, RPE-1
1715801	195	TTG ...	LFP ...	Ribo-seq	TTG		3	sORFs_org_Human	ncRNA sORF	Blood, MDA-MB-231, RPE-1
1099	258	CTG ...	LCH ...	Ribo-seq	CTG		12	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
893060	198	GAC ...	DIL ...	Ribo-seq	GAC	weak	1	sORFs_org_Human	ncRNA sORF	Jurkat

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