Metam
ORF

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Transcript

Transcript

ID CARD

MetamORF ID

94402

ID

ENST00000483839

Name

GTPBP4-203

Strand

+

Biotype

processed_transcript

Start-end positions

1012400-1017197

CDS Start-stop positions

-

CDS Relative positions

-

Sequences

Transcript sequence

CAC ...

Gene

ID

HGNC:21535

Aliases

CRFG,
ENSG00000107937, FLJ10686, FLJ10690,
GTPBP4, HGNC:21535, NCBI:23560,
NGB, NOG1, OFF:GTPBP4


Chr 10

ORFs

40 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

403859 96

CCC ...

PPS ...

Ribo-seq
CCC 1 sORFs_org_Human
    ncRNA
    sORF
HCT116
480139 96

CTG ...

LLE ...

Ribo-seq
CTG weak 4 sORFs_org_Human
    ncRNA
    sORF
Blood, HEK293, HEK293T,
MDA-MB-231
272530 114

CTG ...

LLP ...

Ribo-seq
CTG 2 sORFs_org_Human
    ncRNA
    sORF
HEK293, LCL
403865 36

GGG ...

GKR ...

Ribo-seq
GGG 1 sORFs_org_Human
    ncRNA
    sORF
HCT116
403861 42

TCT ...

SGL ...

Ribo-seq
TCT 1 sORFs_org_Human
    ncRNA
    sORF
HCT116
892851 117

ACT ...

TLL ...

Ribo-seq
ACT 1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
94414 102

TTG ...

LEK ...

Ribo-seq
TTG 6 sORFs_org_Human
    ncRNA
    sORF
HEK293, HeLa, HFF
892833 165

TCT ...

SES ...

Ribo-seq
TCT 1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
480141 93

CTG ...

LES ...

Ribo-seq
CTG moderate 4 sORFs_org_Human
    ncRNA
    sORF
Blood, HEK293, HEK293T,
MDA-MB-231
272527 198

TTG ...

LLP ...

Ribo-seq
TTG 3 sORFs_org_Human
    ncRNA
    sORF
HEK293, HeLa, LCL
94408 126

CTG ...

LAK ...

Ribo-seq
CTG 21 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HeLa,
hES, HFF, LCL,
RPE-1, THP-1
94418 30

GTG ...

VLT ...

Ribo-seq
GTG 26 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HCT116, HEK293,
HEK293T, HeLa, hES,
HFF, Jurkat, LCL,
MDA-MB-231, MM1S, RPE-1,
THP-1
892840 120

TTC ...

FWS ...

Ribo-seq
TTC 1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
272532 99

CTG ...

LWP ...

Ribo-seq
CTG 2 sORFs_org_Human
    ncRNA
    sORF
HEK293, LCL
94412 87

CTG ...

LES ...

Ribo-seq
CTG 15 sORFs_org_Human
    ncRNA
    sORF
BJ, Flp-In_T-REx-293, HAP1,
HEK293, HeLa, hES,
HFF, LCL, RPE-1
892847 132

AGC ...

SIT ...

Ribo-seq
AGC 1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
2902093 135

TTG ...

LKF ...

Ribo-seq
TTG 1 sORFs_org_Human
    ncRNA
    sORF
HeLa
94422 84

GTG ...

VAR ...

Ribo-seq
GTG 23 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HeLa,
hES, HFF, LCL,
MM1S, RPE-1, THP-1
480143 84

ATG ...

MTV ...

Ribo-seq
ATG moderate 4 sORFs_org_Human
    ncRNA
    sORF
Blood, HEK293, HEK293T,
MDA-MB-231
892849 126

AGC ...

SGK ...

Ribo-seq
AGC 1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
94404 198

CTG ...

LRT ...

Ribo-seq
CTG 31 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, Flp-In_T-REx-293,
guo_2014, HAP1, HEK293,
HEK293T, HeLa, hES,
HFF, Jurkat, LCL,
loayza_puch_2016, MDA-MB-231, MM1S,
RPE-1, THP-1, U2OS
403863 81

GCG ...

ADR ...

Ribo-seq
GCG 2 sORFs_org_Human
    ncRNA
    sORF
HCT116, Jurkat
94401 225

TTG ...

LEE ...

Ribo-seq
TTG 29 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, Flp-In_T-REx-293,
guo_2014, HAP1, HEK293,
HeLa, hES, HFF,
LCL, loayza_puch_2016, MDA-MB-231,
MM1S, RPE-1, THP-1,
U2OS
480145 78

GTG ...

VYL ...

Ribo-seq
GTG moderate 4 sORFs_org_Human
    ncRNA
    sORF
Blood, HEK293, HEK293T,
MDA-MB-231
403854 159

AGT ...

SED ...

Ribo-seq
AGT 2 sORFs_org_Human
    ncRNA
    sORF
HCT116, Jurkat
272537 114

ATG ...

MNI ...

Ribo-seq
ATG 5 sORFs_org_Human
    ncRNA
    sORF
BJ, HeLa, LCL,
MM1S
403856 105

AAA ...

KKK ...

Ribo-seq
AAA 1 sORFs_org_Human
    ncRNA
    sORF
HCT116
403852 222

GAA ...

EEL ...

Ribo-seq
GAA 1 sORFs_org_Human
    ncRNA
    sORF
HCT116
94406 141

CTG ...

LEI ...

Ribo-seq
CTG 24 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HeLa,
hES, HFF, LCL,
MDA-MB-231, MM1S, RPE-1,
THP-1
94420 189

CTG ...

LLC ...

Ribo-seq
CTG 6 sORFs_org_Human
    ncRNA
    sORF
Blood, HEK293, HeLa,
LCL
272535 87

GTG ...

VGV ...

Ribo-seq
GTG 1 sORFs_org_Human
    ncRNA
    sORF
LCL
480149 66

GTG ...

VKT ...

Ribo-seq
GTG moderate 4 sORFs_org_Human
    ncRNA
    sORF
Blood, HEK293, HEK293T,
MDA-MB-231
480147 72

CTG ...

LRV ...

Ribo-seq
CTG weak 4 sORFs_org_Human
    ncRNA
    sORF
Blood, HEK293, HEK293T,
MDA-MB-231
94410 96

TTG ...

LKI ...

Ribo-seq
TTG 16 sORFs_org_Human
    ncRNA
    sORF
BJ, HAP1, HEK293,
HeLa, hES, HFF,
LCL, RPE-1
892842 114

CAG ...

QRT ...

Ribo-seq
CAG 1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
94416 33

TTG ...

LVL ...

Ribo-seq
TTG 24 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
LCL, MDA-MB-231, MM1S,
RPE-1, THP-1
892838 108

GAG ...

EKK ...

Ribo-seq
GAG 1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
1132492 78

CTG ...

LSA ...

Ribo-seq
CTG 1 sORFs_org_Human
    ncRNA
    sORF
HEK293
892844 54

TGG ...

WRR ...

Ribo-seq
TGG 1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
892836 138

GAA ...

EIR ...

Ribo-seq
GAA 1 sORFs_org_Human
    ncRNA
    sORF
Jurkat

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

B_cell

BJ

Blood

Brain

Brain_tumor

Breast

Flp-In_T-REx-293

guo_2014

HAP1

HCT116

HEK293

HEK293T

HeLa

hES

HFF

Jurkat

LCL

loayza_puch_2016

MDA-MB-231

MM1S

Monocyte

NCCIT

RPE-1

Skeletal_muscle

THP-1

U2OS