Transcript 605 | MetamORF

Transcript

ID CARD

MetamORF ID

605

ENST00000482153

Name

ZNF511-204

Strand

Biotype

retained_intron

Start-end positions

133308949-133310546

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTT ...

Genome browsers

UCSC

Gene

HGNC:28445

Aliases

ENSG00000198546,
HGNC:28445, MGC30006, NCBI:118472,
OFF:ZNF511, ZNF511

Chr 10

ORFs

9 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
99289	42	GTG ...	VIM ...	Ribo-seq	GTG		16	sORFs_org_Human	Intronic sORF	Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
481023	39	ATG ...	MGT ...	Ribo-seq	ATG	strong	20	sORFs_org_Human	Intronic sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
604	69	GTG ...	VQR ...	Ribo-seq	GTG		19	sORFs_org_Human	Intronic sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
1314404	72	CTG ...	LAP ...	Ribo-seq	CTG		3	sORFs_org_Human	Intronic sORF	HEK293, HeLa
3110906	111	GTG ...	VPR ...	Ribo-seq	GTG		1	sORFs_org_Human	Intronic sORF	hES
2304921	141	GTG ...	VRP ...	Ribo-seq	GTG		1	sORFs_org_Human	Intronic sORF	MDA-MB-231
405714	75	GGG ...	GDV ...	Ribo-seq	GGG		3	sORFs_org_Human	Intronic sORF	HCT116, HEK293, Jurkat
99291	30	GTG ...	VAD ...	Ribo-seq	GTG		14	sORFs_org_Human	Intronic sORF	HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
900247	72	TTG ...	LRA ...	Ribo-seq	TTG		2	sORFs_org_Human	Intronic sORF	HAP1, Jurkat

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