Transcript 184158

Transcript

ID CARD

MetamORF ID

184158

ENST00000479131

Name

ZMPSTE24-204

Strand

Biotype

processed_transcript

Start-end positions

40258236-40262905

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGT ...

Genome browsers

UCSC

Gene

HGNC:12877

Aliases

ENSG00000084073,
FACE-1, HGNC:12877, HGPS,
NCBI:10269, OFF:ZMPSTE24, PRO1,
STE24, Ste24p, ZMPSTE24

Chr 1

ORFs

13 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
184164	168	CTG ...	LDA ...	Ribo-seq	CTG		10	sORFs_org_Human	ncRNA sORF	Flp-In_T-REx-293, HEK293, HeLa, hES, HFF
889434	132	GAT ...	DSE ...	Ribo-seq	GAT		1	sORFs_org_Human	ncRNA sORF	Jurkat
889427	156	CCA ...	PPE ...	Ribo-seq	CCA		1	sORFs_org_Human	ncRNA sORF	Jurkat
1389909	120	GTG ...	VLL ...	Ribo-seq	GTG		1	sORFs_org_Human	ncRNA sORF	HEK293
184189	96	CTG ...	LDK ...	Ribo-seq	CTG		15	sORFs_org_Human	ncRNA sORF	Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, U2OS
184157	192	GTG ...	VAM ...	Ribo-seq	GTG		13	sORFs_org_Human	ncRNA sORF	BJ, HEK293, HeLa, hES, HFF, MM1S, RPE-1, THP-1
1389914	99	GTG ...	VYL ...	Ribo-seq	GTG		1	sORFs_org_Human	ncRNA sORF	HEK293
889429	150	GAG ...	ELG ...	Ribo-seq	GAG		1	sORFs_org_Human	ncRNA sORF	Jurkat
184166	159	TTG ...	LWE ...	Ribo-seq	TTG		6	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, hES, HFF
889431	141	CAG ...	QIM ...	Ribo-seq	CAG		1	sORFs_org_Human	ncRNA sORF	Jurkat
1389911	117	CTG ...	LLF ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	HEK293
299953	147	GTG ...	VHA ...	Ribo-seq	GTG		14	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
889437	102	TAT ...	YQL ...	Ribo-seq	TAT		1	sORFs_org_Human	ncRNA sORF	Jurkat

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